Gene detail

Gene detail information of Glyur000011s00000713.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G09890.1	Rhamnogalacturonate lyase family protein
NR	XP_008378659.1	PREDICTED: probable rhamnogalacturonate lyase B [Malus domestica]
trEMBL	tr\|A0A061FFK8\|A0A061FFK8_THECC	Rhamnogalacturonate lyase family protein {ECO:0000313\|EMBL:EOY15517.1}

Sequence

Transcript Sequence

>Glyur000011s00000713.1
GTTCTTAGAAATTTTGCTGGAATTTCCCAAANCGAAATTTCTTTGTTCCACTCTCTTTCTTATTCTCTCGCTCCGCCCCTGTTTCTGTTCGCTGGCTCTGTTTTCCTTTANGCGCTTACAGTTACCCCGCCACTATTTCCATACTCTCATTCTCATTAAAACGTGAAGCGATTGAAATTGGTGCGATCGATTCTTAACCCTGGCTGAGATTTCTTGTTATCTGCAAAATATTAATAAAATTAATAAAAAAAATAGCAAGGATTTACCATGTCCGCCCCAGGGGTACGATTGCACATCCAAGGGAACTATGTGGTGATGGATAATGGCATAGTCCAAGTTACGTTATCAAATCCAGATGGAATTGTCACTGGAATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAACAAGGAATCTAATAGAGGGTACTGGGATCTTATGTGGAGTGCCCCGGGAAGCAAAGGAATGATTAAAGGAACATGTTTTGAAGTTATAGTTCAAAATGAGGATCAGGTGGAGCTTTCATTCAGAAGAATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTCCCCTTAAATATTGACAAAAGATTCATAATGCTCCGTGGTTCATCGGGCTTCTACTCTTATGGAATTTATGAGCACTTAAATGGATGGCCAGATTTTGATCTTATGTATAGGTTTCAATACATGGCTATGGCAGACAATAGGCGAAGGATTATGCCTTTTCCAGAAGATCGGTTACCAGGAAGATGCCAAACCTTAGGCTATGCTGAAGCTGTCCTACTAGTCAATCCTAAGGACCCACAGTTGAAAGGAGAGGTGGATGACAAGTATCAATATTCATGTGAAAACATAGATAATCGAGTCCATGGGTGGATATCTTTCAGTCCACCTGTAGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAGAATTTGACGTCGCATGTAGGACCCACCACACTTGCAATGTTTCTTAGTGGTCACTACGCGGGACAAGATTTGGTGCCCAAATTTAGAGGTGGTCAACCATGGAAGAAGGTTTTTGGTCCTGTATATATTTATCTTAATTCCAGTTCAATTGGTGATGACCCACTCTGGCTATGGGAGGATGCAAAAATACAGATGATGACAGAAATTCAAAGTTGGCCATATTGTTTCCCTGCTTCAGAGGATTTTTTAAAATCTGATCAACGGGGCAACGTCAGTGGCAGATTACTTGTCTTAGACAGGTACATCAGCACTGACTTAATATCAGCAAATGGTGCTTATGTTGGTCTAGCCCCACCGGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGACGAGAATGGATTTTTTACAATTAGCAATATACGTGTAGGAGACTATAACCTTTTTGCCTGGGTTCCTGGTTTTGTCGGAGACTACAGATTTGGTGATTTTGTGAAGATAACCCCAGGTTCTTATATTGAATTGGGTGAACATGTATATGAACCTCCAAGGGATGGCCCGACATTGTGGGAAATAGGTATTCCTGATAGATCTGCTGCAGAATTTTATGTTCCTGATCCCAATCCACAACATATTAATAAGCTTTTTATCAACCATCCAGACAGGTTCAGGCAATATGGATTGTGGGACAGGTATACAGAATTGTATCCCGATGCAGACTTGGTTTACACAATTGGTGTTAGTGACTATACGAAGGATTGGTTTTTTGCTCAGGTTCCCAGAAAAAGAGAGGATAACACTCATCAAGGAACAACTTGGCAAATCAAGTTTGAAGTCAGTAGTGTGATTCAGGGAGGTACATATAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTAAATGACCCCAATGCAAGGCGTCCCCTATTTACCACTGGATTAATAGGAAGGGACAACTCAATTGCAAGACACGGAATTCGTGGAATCTATTGGCTGTACAATGTGAACATACCAAGTTCTCTTCTCATTGATGGCACGAATACTATATATTTTACGCAACCAAGATGCACTAGTCCCTTCCAGGGTCTCTTGTATGATTATATTCGTTTGGAAGGCCCACCTTTTGTTGGCGGTGGCGATGTGGTGATGGACAATGGCATACTAAGAGTCACCTTATCAAATCCTGAGGGAATTGTCACTGGAATACAGTATAATGACATTGACAACTTGCTTGAAGTTTTGAATGAAGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACCACTGGTAAATTTGATGTGATAAAGGGAACCGCTTTCAAAGTTGTAGTGGAAAATGAGGACCAAGTTGAGATATCCTTCACCAGGACGTGGGACACCTCCCTCGAGGGCAAGTTGGTCCCTTTAAATATTGATAAAAGGTTCATAATGCTTCGTGGTTCTTCTGGTTTCTACTCCTATGCAATTTATGAGCACTTGGAGGACTGGCCTGCTTTCAATCTTGACGAAACTAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCGATGGCAGATAATAGACAAAGAAATATGCCTCTTCCAGATGACAGAGTGCCACCTAGAGGCCAACCACTTGCTTACCCAGAGGCAGTTCTACTTGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGATGGATTTGCGTGGATCCGGCTGTGGGATTCTGGTTAATCACTCCTACCAATGAGTTTCGATCTGGTGGACCCGTCAAACAAAACTTAACTTCCCACGTCGGACCTACCACACTTGCNGTGTTTCTCAGTGCTCATTATAGCGGAGAGGATCTGGTGCCTAAGTTCAAAGCGGGNGAGGCATGGAAAAAAGTGTTTGGTCCAGTTTTCATCTATGTGAATTCTCCATATGATGGAGATGACCCCATTAAGCTATGGGATGACGCTAAACTGCAGATGTTAGTGGAAGTTCAAAGCTGGCCCTATAGTTTTCCTGAATCAGAGGATTTCCCAAAGTGGGACGAACGTGGTAATGTTAGTGGCAGGCTATTGGTTANAGAAAGGTATTTCACCGATGATGACTATATAGCAGCAAAAGGTGCTTATGTTGGCTTGGCTCCACCAGGAGACGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGACTAAAGCAGATGATGATGGCTATTTCTCCATCCCCAATATACGTGCTGGCGACTATAATGTTTATGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTGATTATGAGCATAATAGAAGGTTGTGACATAGACATTGGTGATCTTGTTTATGAACCTCCAAGAGATGGTCCAACACTGTGGGAAATTGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCCAAATATATCAACAAACTCTATGTTAATCATCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATGNAGAACTATACCCTGACAAAGACTTGATCTACACCATTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGACAATACATATCAGGGAACCACGTGGCAAATCAAGTTTAAGCTTGATAATGTGAACAAAAGCAGTGGTAGCTATAAACTCCGAGTGGCTTTGGCATCAGCAACATTTTCAGAACTTCAGGTACGAGTGAATGACCCAAAGGCAAATCGCCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCAATAGCTAGGCACGGAATTCACGGGCTTTATTGGCTTTACAATGTGGACATACCTGCTACTCGACTTGTTGAAGGAGATAACACCATCTTCTTGACACAGGCAAGAGGCAATGGTCCATTTCAGGCCATTATGTATGACTATATTCGTTTGGAAGGTCCACCCCTCTCCTCTAGGGTGCGATTGGATATTCAAGAAAAACATGTGGTAATGGATAATGGCATAGTCCAAGTCACCTTATCAAACCCCGAAGGAATTGTCACGGGAATTCANTATAATGGGCTCGACAATTTGCTCGAAGTTCAAAACCAGGAATCTGACAGAGGGTACTGGGATATTGTATGGGACGAGGGTGGGAAGAAAAGAACAAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGGATGGAAGCCACAAATTTTACGGTGATAGTGGAAAATGAAGAACAACTAGAGATATCTTTCACCAGAATGTGGAATCTCTCTCTTGAGGGGAAGCTTGCGCCGCTCAATATTGATAAAAGGTTTATAATGCTTCGTGGTTCGTCTGGGTTCTACACGTATGCTATTTACGAGCATTTGAAGGAATGGCCTGCTTTCGATCTTGACAATACTAGGATTGCATTCAAGCTTAGGAAAGACAAGTTCCAGTACATGGTTATAGCAGACGACAGGCAGAGATTTATGCCAGTGCCTGATGACCGGTTACCGGGAAGAGGGCAAGTTCTGGCCTACCCAGAGGCTGTCCGGCTTGTCAATCCGGTGGAGCCGGAGTTCACAGGAGAGGTGGATGACAAGTATGAGTACTCGNGTGAGAGCCGAAGCAACCGTGTCCATGGCTGGATCTCCATCGACCCGTCGCAATCCACCACCGGATTCTGGCTAATCACGCCCAGCTACGAGTTCCGATCTGCTGGCCCCCTCAAGCAATANCTCACTTCCCACGTGGGCCCCACTACCCTCTCTGTATTCCACAGCACGCATTATTCCGGGGCAGATCTGATAATGAAATTTGGACCCAACGAGCCGTGGAAGAAAGTCTATGGGCCCATATTCATATACTTTAATTCCCTGTCTGATGATGGGCTTAGCCCGATCAATCTCTGGGAGGACGCCAAACAACAGATGGTCAATGAAATTGAAAGTTGGCCCTATACATTTCCAGCTTCCGAGGACTTTCTCTCATCTGACCAACGAGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGACAGGTACAGTACCAGTGATGCATTCATCCCAGTCAGTGGTGCTTATGTGGGATTAGCAGCCCCAGGAGATGTTGGATCTTGGCAAAGAGAATGCAAGGGTTATCAATTTTGGACCATCACTGATGAGAAAGGTTATTTCTCAATTATTGACATACGTCCTGGGGACTATAATCTGTATTCCTGGGTCACTGGATTCATCGGTGATTATCGATATGATAGCGTCATTAACATAACCTCAGGTTGTGAAATTGATGTGGGTGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACGTTGTGGGAAATAGGCGTCCCTGATCGCTCAGCTGGTGAGTTCTATGTTCCTGATCCAAATCCCATGTATGTGAACAGACTTTATGTCAACCATCCAGATAGGTTTAGGCAATATGGCTTGTGGGAGAGATATGCTGATTTGTATCCAAATGAAGACCTTGTTTACACTGTTGGCATTAGTGACTACAGAAAAGATTGGTTTTTTGCTCAGGTTAACAGGAAAAAAGATAATAACACTTACCAAGGAACCACATGGCAAATTCATTTCAATCTTGATTANGTAAATACCAATGGAACATACAAATTGAGACTGGCTCTGGCATCTGTACACAATGCTGAGCTACAGATTCGGATAAACAATATTTCAGAAGCAAATCCACCTTTATTTTCAAGTGGGGTTATTGGAAAGGAGAATACCATAGCCAGGCATGGAATTCACGGGCTCTACTGGTTGTACAGCATTGATGTACAAGGCACTCTTCTTGTGCAGAAGAACAATACCATCTTTCTAACGCAAGCTAGCAACACAGGTCCTTTTGAAGGAATTTTGTATGATTATATTCGTTTAGAAGGACCCCCTGATATAAATTATANAGATCAAAACTAGAGATACTTCTAAAGAATA

Protein Sequence

>Glyur000011s00000713.1
MSAPGVRLHIQGNYVVMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNKESNRGYWDLMWSAPGSKGMIKGTCFEVIVQNEDQVELSFRRMWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDLMYRFQYMAMADNRRRIMPFPEDRLPGRCQTLGYAEAVLLVNPKDPQLKGEVDDKYQYSCENIDNRVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSGHYAGQDLVPKFRGGQPWKKVFGPVYIYLNSSSIGDDPLWLWEDAKIQMMTEIQSWPYCFPASEDFLKSDQRGNVSGRLLVLDRYISTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTISNIRVGDYNLFAWVPGFVGDYRFGDFVKITPGSYIELGEHVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPQHINKLFINHPDRFRQYGLWDRYTELYPDADLVYTIGVSDYTKDWFFAQVPRKREDNTHQGTTWQIKFEVSSVIQGGTYKLRVAIASATLAELQIRVNDPNARRPLFTTGLIGRDNSIARHGIRGIYWLYNVNIPSSLLIDGTNTIYFTQPRCTSPFQGLLYDYIRLEGPPFVGGGDVVMDNGILRVTLSNPEGIVTGIQYNDIDNLLEVLNEESNRGYWDLVWSSPTSTGTTGKFDVIKGTAFKVVVENEDQVEISFTRTWDTSLEGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRVPPRGQPLAYPEAVLLVDDKYQYSCDNKDSQVHGWICVDPAVGFWLITPTNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYVNSPYDGDDPIKLWDDAKLQMLVEVQSWPYSFPESEDFPKWDERGNVSGRLLVXERYFTDDDYIAAKGAYVGLAPPGDVGSWQRECKNYQFWTKADDDGYFSIPNIRAGDYNVYAWVPGFIGDYKYDVIMSIIEGCDIDIGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYXELYPDKDLIYTIGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDNVNKSSGSYKLRVALASATFSELQVRVNDPKANRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIPATRLVEGDNTIFLTQARGNGPFQAIMYDYIRLEGPPLSSRVRLDIQEKHVVMDNGIVQVTLSNPEGIVTGIXYNGLDNLLEVQNQESDRGYWDIVWDEGGKKRTKKGAKGKGRFDRMEATNFTVIVENEEQLEISFTRMWNLSLEGKLAPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKLRKDKFQYMVIADDRQRFMPVPDDRLPGRGQVLAYPEAVRLVNPVEPEFTGEVDDKYEYSXESRSNRVHGWISIDPSQSTTGFWLITPSYEFRSAGPLKQXLTSHVGPTTLSVFHSTHYSGADLIMKFGPNEPWKKVYGPIFIYFNSLSDDGLSPINLWEDAKQQMVNEIESWPYTFPASEDFLSSDQRGKVEGRLLVRDRYSTSDAFIPVSGAYVGLAAPGDVGSWQRECKGYQFWTITDEKGYFSIIDIRPGDYNLYSWVTGFIGDYRYDSVINITSGCEIDVGELVYEPPRDGPTLWEIGVPDRSAGEFYVPDPNPMYVNRLYVNHPDRFRQYGLWERYADLYPNEDLVYTVGISDYRKDWFFAQVNRKKDNNTYQGTTWQIHFNLDXVNTNGTYKLRLALASVHNAELQIRINNISEANPPLFSSGVIGKENTIARHGIHGLYWLYSIDVQGTLLVQKNNTIFLTQASNTGPFEGILYDYIRLEGPPDINYXDQN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	517559	540791	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	PL4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000011s00000713.1	PF06045.6	Rhamnogal_lyase	5	187	4.30E-82
Glyur000011s00000713.1	PF14686.1	fn3_3	318	416	1.20E-25
Glyur000011s00000713.1	PF14683.1	CBM-like	426	615	2.00E-53
Glyur000011s00000713.1	PF06045.6	Rhamnogal_lyase	625	805	9.90E-90
Glyur000011s00000713.1	PF14686.1	fn3_3	934	1034	2.00E-27
Glyur000011s00000713.1	PF14683.1	CBM-like	1043	1233	1.10E-57
Glyur000011s00000713.1	PF06045.6	Rhamnogal_lyase	1240	1445	1.90E-90
Glyur000011s00000713.1	PF14686.1	fn3_3	1580	1679	8.10E-28
Glyur000011s00000713.1	PF14683.1	CBM-like	1689	1879	9.80E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.283
SRR1783600	control	11.254
SRR1783602	moderate drought stress	11.010
SRR1811619	moderate drought stress	10.966

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.595
DRR006520	Root Summer glycyrrhizin high producing strain	12.458
DRR006521	Root Winter glycyrrhizin high producing strain	10.134
DRR006522	Root Winter glycyrrhizin high producing strain	9.844
DRR006523	Root Summer glycyrrhizin low producing strain	15.376
DRR006524	Root Summer glycyrrhizin low producing strain	15.716
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.450
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.472

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.246
SRR2868004	Drought Stress (root)	11.655
SRR2967015	Control (root)	9.795

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.055
SRR9715740	Leaf	7.526
SRR9715741	Leaf	6.593
SRR9715739	Root	3.759
SRR9715742	Root	7.993
SRR9715743	Root	7.058

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.791
SRR8749028	MeJA induced 9h	19.004
SRR8749029	MeJA induced 9h	11.429
SRR8749030	Uninduced	59.240
SRR8749031	Uninduced	36.916
SRR8749032	Uninduced	22.686

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.963
SRR8400027	Control - Root	17.123