Gene detail

Gene detail information of Glyur000011s00000702

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65670.1	1.00E-93	indole-3-acetic acid inducible 9
NR	KHN09036.1	0	Auxin-responsive protein IAA8 [Glycine soja]
Swissprot	tr\|Q38827\|IAA9_ARATH	3.00E-113	Auxin-responsive protein IAA9
trEMBL	tr\|C6TKM2\|C6TKM2_SOYBN	8.00E-176	Auxin-induced protein {ECO:0000256\|RuleBase:RU004549}

Sequence

Transcript Sequence

>Glyur000011s00000702.1
ATGATTGTTGCTAATTTCACGCCTCTTGGCCGAAAAGCAAAGAAATTCTGGACAAAGGTAGAATATACAATATTGGGAGTTTTTATTGTGATGTCTCCAGCAGTGCTGGGCATAGGGGAGGAGGAGGGTAAAAAAAGCAATGCCACCATTGAATTGAGAGAACGCAACTACATGTCGATGGGTTTATCTGATTGTTCTTCTGTGGACGGCTCTGTTCCGTCCTTCTCAGATGAGAGTAAAAGTAATCTGAATCTGAAAGCTACTGAACTCAGGCTCGGGCTTCCGGGATCACAGTCTCCTGAAAGAGATTCTGACATTTGCCTAAGAAGCTCACCTCAATTCGATGAAAAGCCCCTGTTTCCTCTGCGCCCTTCGACGGATGATCACCATTCCGCAGCAAAGACTGCTGCTGTTTTGGGCAACAAAAGAGGTTTCTCAGATGCCATGAATGGTCTCTCAGAGGGAAAATTCCTAGTTAATTCGGAGGCCAATCCAATTCTGTCACCCAGGCCTTCTTCTAACATAGGATCAAAACCCGGTTCTGTGCCTGAGAATGCTGGGGCTCAACAAGCCAAATTGAAAGAAGTAGTAACAACGAAGCCAAATGATGGTCCTGCAAATAATAATAGCAGTGCACCAGTTACCAAGGCTCAGGTTGTGGGGTGGCCTCCTATAAGATCATTTAGGAAAAATTCAATGGCCACTAATTCAAAGAACAACGATGAAGTTAATGGAAAAGTGGGGTGTGGTGCACTGTTTGTCAAGGTCAGTATGGATGGTGCTCCCTATTTAAGGAAAGTAGACCTGAAGAGTTACACTANATATCCAGAATTATCTTCTGCTCTAGAAAAGATGTTCAGCTGTTTTACTATAAGTCAATGTGAATCCCATGGAGCTTTGGGCAGGGAGATGCTGAATGAAACAAAGCTGAAGGAACTTCTTCATGGATCAGAGTATGTTGTTACTTATGAGGACAAAGATGGCGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTCATTGAAACATGCAGGAGGCTGAGGATCATGAAGAGTTCTGATGCCATTGGTTTAGATATGCTCCCAGGGCTGTTGAAAAAAGCAAGAGCAGGAGCTAGGCAATACCACTCGTTCCACCACACTATGCACCTAACTGTAATGGGATTCAAAAAGCTTCTGTTTTGTGTTGTCATGGTGTTTGTGTTCAGCAAGCTTCTTTCTTTTTTCAAGATGGTTAATGATGTGGTTGAAGGATATGTAATGTACGTTGGATACGGTTGTCGTTGGGGTGCAGGAGCCAAGCATGTGAAGCTCTGCACCGCGGTGGCGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	452723	458257	-

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA
EAR motif-containing Proteins	AUX/IAA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000011s00000702.1	PF02309.11	AUX_IAA	83	361	1.60E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	43.334
SRR1783600	control	43.454
SRR1783602	moderate drought stress	47.044
SRR1811619	moderate drought stress	46.464

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.810
DRR006520	Root Summer glycyrrhizin high producing strain	27.303
DRR006521	Root Winter glycyrrhizin high producing strain	1.622
DRR006522	Root Winter glycyrrhizin high producing strain	1.498
DRR006523	Root Summer glycyrrhizin low producing strain	68.643
DRR006524	Root Summer glycyrrhizin low producing strain	68.841
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.605
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.649

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.640
SRR2868004	Drought Stress (root)	35.446
SRR2967015	Control (root)	41.131

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.003
SRR9715740	Leaf	4.957
SRR9715741	Leaf	7.904
SRR9715739	Root	58.595
SRR9715742	Root	55.131
SRR9715743	Root	59.669

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.251
SRR8749028	MeJA induced 9h	5.277
SRR8749029	MeJA induced 9h	14.346
SRR8749030	Uninduced	0.653
SRR8749031	Uninduced	0.726
SRR8749032	Uninduced	3.455

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	86.874
SRR8400027	Control - Root	98.573