Gene detail

Gene detail information of Glyur000011s00000688.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G27600.2	7.00E-106	Nucleotide-diphospho-sugar transferases superfamily protein
NR	XP_004501068.1	0	PREDICTED: probable beta-1,4-xylosyltransferase IRX9H-like [Cicer arietinum]
Swissprot	tr\|Q9SXC4\|IRX9H_ARATH	5.00E-144	Probable beta-1,4-xylosyltransferase IRX9H
trEMBL	tr\|Q50HW4\|Q50HW4_MEDTR	0	Beta-1,4-xylosyltransferase, putative {ECO:0000313\|EMBL:AES73931.1}

Sequence

Transcript Sequence

>Glyur000011s00000688.1
AGGAACTGGGAATAGGAAGGAAGCAGAAAAGAACTCAACAGTTCCAAACAGATCTCTCATCTCTCTNACTCTCTCTCTCAGATTTAACCCCTGCTTGTTTTTTTAGGGTTTTCGATCTTTCTCCCATTGTTTCCAATCTCTCTCTCTCTCTTCCTTTTCCCTCCTCATGTAATTTCATTTCCCCATTTTTTGGGTGGCGCGTGAGAGGTAAATTAAATGGCGTCAATCCGGCGGACGCTGTCGCCGGCGTATCACGAGCGCCAGTACTTAAACGGCGCGTTTTCAGTGTCGTCTCCATCTCACAAGCTCTCCTCTTCAAACGCCAAGTACTCGGCTCTGGCGGCGTCGTTTCAGAGAGTTGTCGGAGGCGTTTTCATGCGACGGTACGGTCGGAAGGGGCAGTGGCGAAGGGTTGCGTTCAGGTGCGTGCTGTTTTTTCTGTTAGGGTTTCTGTTAGGAATGTTCCCTTTCGGCCACGTGGTCGAAGACATTCGTCCACAGGAAACGTCTTACGAGATCAAAAATACGCAAAAAATGCTTCGCGAGGATCGCGTTCCGCAGAAACGCGTTGGTGCCGTTGGCGGCGGCGATGGCGGCGCTTTCGTGATCGATCCGGTGAGCCTGAGCGTGGAGAAGGCGAAGCAGAGCGAGAGCACGAGCATGTTGGTTGAGTCTGAGAGGTTCGATTTCGTGCCGAGGAAGCAGCTGATTGTGGTGACGCCGACGTATAACCGTGCATTTCAGGGGTATTTCCTGAACAGGTTGGGGCAAGTTTTGAGGTTGGTGCCGCCTCCGATTATGTGGGTGGTGGTGGAGATGAACTCGGCTTCGATGGAGACTGCGGAGTTGCTGAGGAAAACGGGTGTGATGTATAGGCATTTGGTGTGCACTAAGAACTCCACGGATGTGAAGGACAGAGGGGTTCATCAGAGGAATAGGGCGTTGGAGCACATTGAGCATCATAGACTCGATGGGATTGTTTACTTTGCAGATGATGATAATGTATATTCTCTCGAGCTGTTTGAGGCCTTGAGAGACATCAGGCGCTTTGGCACTTGGCCTGTAGCCATGCTTGCACCAAGCAAGAACAAGGCTATTTTGGAGGGTCCAGTATGCAATGCAAGCCAAGTGATTGGGTGGCATACAAATGAGAAAAGTAAAAGACTTCGTAGATTTCATGTTGATATGTCTGGATTTGCATTTAACAGCACAATCTTGTGGGATCCGAAGAGATGGCGACGTCCTACTTCAAATCCTATACGGCAATTAGACACAGTGAAGGAGGGTTTTCAGGTATGCCTCCTGTCATTATTACTCTTTAATTTTCCCCACCCTATTAATATCATCTGCAATTCTTATAATCAGCAAACTGATATCACCTTTGATTTGACAGGAGACAACCTTTATAGAACAATTGGTGGAAGATGAGAGTCAAATGGAAGGTTCACTGCCTGGTTGTTTGAAAATAATGAATTGGCATCTCCATTTGGATGCTCATAATATGGATTATCCAAAGGGTTGGATGCTTCAGAAAAACCTAGATGCTGTCATACCCATCAAGTAGTCCTCCACCAATTCTGTTGAGTGTGTGATAGGGGCAACTTTTTGCTGTTGTAAAGTATGCTTTCTCTGAGAAAGAGATCCTCCGCCAAGAGGGAAAAATGTTGTAAATTGTAATCAACTTGTTTGATTATCAACGTTATACACAGCTATGTAGTCGGTGGACGATTCTTTCGGGGGGCTAATTTCATGTCGACCAATACTATTTCTGATTTTGGCCTTGAATCAAAATCTGCAGAGGGCAATTCTAAAATGTACTCCTATATTCCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	374286	377879	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000011s00000688.1	PF03360.11	Glyco_transf_43	184	359	1.70E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.328
SRR1783600	control	10.934
SRR1783602	moderate drought stress	9.186
SRR1811619	moderate drought stress	9.266

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.377
DRR006520	Root Summer glycyrrhizin high producing strain	20.683
DRR006521	Root Winter glycyrrhizin high producing strain	9.416
DRR006522	Root Winter glycyrrhizin high producing strain	8.821
DRR006523	Root Summer glycyrrhizin low producing strain	22.889
DRR006524	Root Summer glycyrrhizin low producing strain	21.934
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.101
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.126

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.561
SRR2868004	Drought Stress (root)	29.427
SRR2967015	Control (root)	29.579

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.404
SRR9715740	Leaf	14.991
SRR9715741	Leaf	15.329
SRR9715739	Root	23.442
SRR9715742	Root	20.045
SRR9715743	Root	24.225

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.599
SRR8749028	MeJA induced 9h	19.458
SRR8749029	MeJA induced 9h	24.640
SRR8749030	Uninduced	16.757
SRR8749031	Uninduced	16.161
SRR8749032	Uninduced	12.774

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.271
SRR8400027	Control - Root	28.887