Gene detail

Gene detail information of Glyur000011s00000686

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G58340.1	8.00E-178	MATE efflux family protein
NR	XP_002510003.1	0	multidrug resistance pump, putative [Ricinus communis]
COG	YP_003264696.1	7.00E-40	MATE efflux family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9SIA5\|DTX1_ARATH	7.00E-73	MATE efflux family protein DTX1
trEMBL	tr\|B9R6R0\|B9R6R0_RICCO	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000011s00000686.1
ATGTGTAATCCGAAGCCATTTCTGTGTCCCACAAAAACCCACCTCATAACACCCGACCCTAAAGTCACGAATTGTCCTCCTGATGATCCAGTTCAACAAGATGAACTTCAGAGATGGCCAACTCCTAATGAGGTCATAGCAGAAATGAAGGCCATAGGGAAGATATCAGTCCCAACAGCCATAACCGGTTTACTCTTATACTCAAGAGCTATGATCTCCATGCTTTTCCTCGGCTACCTCGGCGAGATGGAGCTAGCTGGAGGCTCTCTCTCCATCGGTTTCGCCAACATCACCGGNTACTCTGTAATCTCAGGACTAGCCATGGGAATGGAACCCATTTGTGGACAAGCCTATGGTGCCAAACAACGGAAGATCCTTGGCCTCACCCTTCAAAGAACCGTTCTTTTACTCCTATCAACCTCCATCCCAATCTCATTCACATGGCTCAACATGAATAGAATCCTCTTATGGTGTGGCCAAGACAAAGAAATATCATCAATAGCACACACTTTCATACTCTTCTCATTACCCGACCTTTTCTTCCTCTCACTTCTCCACCCTCTCCGAATCTACCTGAGAACACAGAGCATCACATTGCCCTTAACATATTGCTCAGCCATCTCAATTATCCTCCATGTGCCCCTGAATTTCCTTTTGGTGTTCCATTTCAAGATGGGTATTGCAGGGGTAGCACTGGCAATGGTTTTGACCAACCTCAACCTTTTTCTTTTCCTTTCTTCCTTTGTTTACTTCTCTGGTGTATATAAAGACTCGTGGGTTTCCCCAAGCATGGATTGTCTCAGGGGATGGTCTTCATTGCTTGCACTTGCGGTTCCAACTTGTGTTTCCGTTTGTCTNGAGTGGTGGTGGTACGAACTCATGATAATGTTGTGTGGACTTTTGGTCAACCCAAAAGCCACCATTGCCTCAATGGGGATCCTCATTCAGACAACATCGTTGGTCTACGTGTTCCCTTCATCCCTTAGTCTCGGTGTTTCAACAAGAGTTGGGAACGAGTTGGGCGCGAACCGGCCCGCGAAGGCACGCATTTCGATGATCGTGTCGCTCCTTTGTGCCGTCGCTTTGGGAATCGCGGCCACGTTGTTTACCACGTTGATGAGGCACCAATGGGGAAGGTTCTTCACTAGCGACAGAGAGATTCTTGATCTGACNGCTATGGTGTTGCCGATTGTTGGGCTTTGTGAGCTTGGGAATTGTCCACAGACTACGGGCTGTGGTGTCCTCAGGGGAAGCGCGAGACCCACCGTTGGGGCTAACATCAACTTGGGCTCGTTTTACTTGGTGGGTATGCCCGTGGCTATCGTTCTTGGGTTTGTGGCTAAAATGGGTTTTGCCGGGCTTTGGCTTGGGTTGCTTGCGGCCCAAGCCTCTTGTGCTGCTCTCATGTTGTTCGTTCTTTTCACAACTGACTGGAATGCCCAAGCACAAAGGGCAAAGGACCTCACCAAAACTCCACCACCAGCTACTACTACTTCTCCTAATTCTACATCATTACCGGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	349857	351619	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000011s00000686.1	PF01554.13	MatE	58	218	2.20E-30
Glyur000011s00000686.1	PF01554.13	MatE	279	441	3.80E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.932
SRR1783600	control	5.193
SRR1783602	moderate drought stress	3.081
SRR1811619	moderate drought stress	3.637

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.428
DRR006520	Root Summer glycyrrhizin high producing strain	0.354
DRR006521	Root Winter glycyrrhizin high producing strain	0.855
DRR006522	Root Winter glycyrrhizin high producing strain	0.619
DRR006523	Root Summer glycyrrhizin low producing strain	0.702
DRR006524	Root Summer glycyrrhizin low producing strain	0.734
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.093
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.183

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.870
SRR2868004	Drought Stress (root)	0.857
SRR2967015	Control (root)	2.377

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.365
SRR9715740	Leaf	1.979
SRR9715741	Leaf	0.678
SRR9715739	Root	0.443
SRR9715742	Root	0.587
SRR9715743	Root	1.020

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.014
SRR8749028	MeJA induced 9h	0.964
SRR8749029	MeJA induced 9h	0.742
SRR8749030	Uninduced	0.417
SRR8749031	Uninduced	0.194
SRR8749032	Uninduced	0.473

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.381
SRR8400027	Control - Root	1.089