Gene detail

Gene detail information of Glyur000011s00000674

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G50010.1	tubulin alpha-2 chain
NR	XP_003603670.1	Tubulin alpha-7 chain [Medicago truncatula]
Swissprot	tr\|P33629\|TBA_PRUDU	Tubulin alpha chain
trEMBL	tr\|G7J421\|G7J421_MEDTR	Tubulin beta-1 chain {ECO:0000313\|EMBL:AES73921.1}

Sequence

Transcript Sequence

>Glyur000011s00000674.1
TGGCGCAACGGTTAGTAGTGAGGGAAAGCAGCGAGCCTGTCCCAGGCTGGGAAAGTGGGCCATATAAACGTTACGTAGGATTCGAAATCGTGCAAGACAATCCTCGCTGTCAAACCAAACCAGGGTCAGCTAACCCTAGTTCATTCGTAACCGTACATTTCAAAATTAGTCCTCTCTCTCTTCGTTCGCTCTATATAAAATAACTCCCCCATCAAAGAAGATCCCACACTCACAGATCACAATTCCAATAGAGNGAGAAGGCGTCTTAATAAACGCCCCTCGCTCAAATCAAACTCTCTTCGATTCCATTTCCATTTCATTTCTAGGGTTTTGCTTGTTCGTTTGATTTTCCCGAGAAAATGAGAGAGTGCATTTCAATCCACATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGACAGATGCCGAGCGACAAAACCGTCGGCGGAGGAGACGATGCCTTCAACACGTTTTTCAGCGAGACCGGCGCCGGAAAACACGTGCCTCGCGCNGTGTTCGTGGATCTTGAACCCACCGTCATCGATGAAGTGAGGACCGGCACCTACCGTCAACTCTTCCACCCCGAGCAACTCATCAGCGGCAAGGAAGACGCCGCCAACAATTTCGCCCGTGGTCATTATACCATTGGGAAGGAGATTGTTGATCTTTGCCTGGACAGAATCAGGAAGCTGGCTGATAACTGCACGGGTCTGCAGGGTTTCTTGGTGTTCAACGCCGTCGGTGGTGGGACCGGATCTGGTTTGGGTTCTCTTCTGTTGGAGCGTCTCTCTGTTGATTACGGTAAAAAGTCTAAGCTGGGCTTCACCGTTTATCCCTCACCCCAGGTTTCAACCTCCGTGGTTGAACCCTACAACAGCGTCCTTTCAACCCATTCCCTCCTCGAGCACACCGATGTCGCCGTCCTCCTCGACAACGAAGCCATCTACGACATCTGCAGGCGCTCCCTCGACATTGAACGCCCCACTTATACCAACCTCAACCGCCTCGTCTCTCAGGTGATTTCGTCCCTCACTGCCTCTTTGAGGTTCGATGGTGCACTGAATGTTGATGTTACTGAATTCCAAACCAACTTGGTTCCTTACCCAAGGATCCATTTCATGCTTTCCTCTTATGCACCTGTTATCTCTGCTGAGAAAGCGTACCATGAGCAGCTTTCCGTTGCTGAGATCACCAACAGTGCTTTTGAGCCTTCTTCCATGATGGCCAAGTGTGACCCACGCCATGGCAAGTACATGGCTTGTTGTTTGATGTATCGTGGTGATGTTGTGCCCAAGGATGTGAATGCTGCTGTGGCCACCATCAAGACCAAGCGCACCATCCAGTTCGTGGATTGGTGCCCCACTGGGTTCAAGTGCGGTATCAATTACCAGCCCCCAACAGTTGTTCCTGGTGGTGACCTTGCCAAGGTGCAGAGGGCAGTGTGCATGATCTCTAACTCTACCAGTGTTGCTGAGGTGTTCTCCAGGATTGATCACAAGTTTGATCTCATGTATGCTAAGCGTGCTTTCGTGCACTGGTATGTGGGTGAGGGAATGGAAGAGGGTGAGTTCTCAGAGGCTCGTGAGGACCTTGCTGCTCTTGAGAAGGATTATGAGGAGGTTGGTGCTGAGTCTGGTGATGGAGATGATGTTGAAGGAGATGAAGATTACTAGAACGTGCCAAGAAGGATCACGTGTTTGCTACNATGTGCTTTTTCGTTTTATTTGGGACAACAATTTATCTTGTGGTTTTTTGGATGTTGGGTTGTGCTTGTGANCAATGATTGTGCTGTTTATAGCACAAAAGCTTAATCTACTATTTCTGCTTCTATTGCCGTAATTTCGATCTCTATTTCTTTTTGGTAATTAGTTTTAAATTTTAGATCTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	289346	291636	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007017 microtubule-based process

GO:0051258 protein polymerization

cellular_component

GO:0005874 microtubule

GO:0043234 protein complex

molecular_function

GO:0003924 GTPase activity

GO:0005200 structural constituent of cytoskeleton

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000011s00000674.1	PF00091.20	Tubulin	3	225	2.70E-69
Glyur000011s00000674.1	PF03953.12	Tubulin_C	263	393	2.80E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	820.098
SRR1783600	control	823.027
SRR1783602	moderate drought stress	628.615
SRR1811619	moderate drought stress	624.618

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	645.863
DRR006520	Root Summer glycyrrhizin high producing strain	638.521
DRR006521	Root Winter glycyrrhizin high producing strain	67.069
DRR006522	Root Winter glycyrrhizin high producing strain	65.222
DRR006523	Root Summer glycyrrhizin low producing strain	351.107
DRR006524	Root Summer glycyrrhizin low producing strain	351.446
DRR006525	Leaf Summer glycyrrhizin high producing strain	117.037
DRR006526	Leaf Summer glycyrrhizin high producing strain	116.088

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1345.105
SRR2868004	Drought Stress (root)	835.380
SRR2967015	Control (root)	827.241

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	129.583
SRR9715740	Leaf	36.866
SRR9715741	Leaf	45.971
SRR9715739	Root	944.237
SRR9715742	Root	541.142
SRR9715743	Root	611.502

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	704.030
SRR8749028	MeJA induced 9h	397.948
SRR8749029	MeJA induced 9h	352.675
SRR8749030	Uninduced	14.196
SRR8749031	Uninduced	16.648
SRR8749032	Uninduced	47.980

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1338.857
SRR8400027	Control - Root	1557.347