Gene detail

Gene detail information of Glyur000011s00000673.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49650.1	0	xylulose kinase-2
NR	XP_003603669.1	0	Xylulose kinase [Medicago truncatula]
COG	YP_003548613.1	8.00E-91	FGGY-like carbohydrate kinase [Coraliomargarita akajimensis DSM 45221]
trEMBL	tr\|G7J420\|G7J420_MEDTR	0	Xylulose kinase-like protein {ECO:0000313\|EMBL:AES73920.1}

Sequence

Transcript Sequence

>Glyur000011s00000673.1
CAAATAATTTGTTCTCATCCAATTCGAAATAGACGNCATAGAAGTTATTTATGAACAATTCATTAACCGCTTCCTCTCGGATTTCGAAATTCTGTGATATCTGATCTATCAGCAGCACACGAAAGAGTGTTGTGTGTGATTCGTTCCAATGGCCGAATTCTCTCTTCCTGGGGACTCTTATTTTCTCGGATTTGATAGTTCAACTCAATCGTTAAAGGCAACCGTGTTGGACTCCAACCTCAATATCGTTGCGTCTGAGCTGGTTCACTTTGATTCTGACTTACCCCATTACAAGACCAAAGATGGGGTTTACAGAGACCCCTCTGGCAATGGCAGAATTGTTTCACCCACATTGATGTGGGTGGAAGCTCTTGACCTCATGTTTCAAAAGCTCTCAAAATCAAATCTTGATTTTGCCAAGGTTGCTGCTGTTTCTGGTAGTGGACAGCAACATGGTAGTGTCTATTGGAAAACTGGTAGCTCTCAGATTTTGTCATCATTGGATTCTAAGAAGCCATTGCGGGTACAGCTTGAAAATGCATTTTCCATAAGGGAATCTCCAATATGGATGGACTGTAGCACCACTTCTGAGTGTAGGGCAATTGAGAAAGCTTGTGGGGGTGCCTTGGAGTTGGCTAGNGTGACAGGATCACGTGCATATGAAAGGTTTACTGGCCCCCAGATTAAGAAAATTTCTGATACTCAGCCAGAGATTTATAAGAACACCGAAAGGATCTCGCTTGTTAGCTCCTTCATGGCGTCTCTATTCATTGGTGCTTATTCTGCTATTGATCATACTGATGGTGCAGGCATGAATCTAATGGACATAAAGGAAAAGGCTTGGTCTAAAGTAGCACTTGAGGCAACTGCCCCTGGTTTGGNGTCAAAACTTGGAAAATTGGCCCCTGCATATGCTGTTGCTGGAAATATTGCCGTATATTTTGTAGAGAGGTATCACTTTAACAAGAACTGCTTGGTTGTTCAGTGGTCAGGAGACAACCCTAATAGTCTGGCAGGTTTGACCCTAAATATTCCAGGAGATCTCGCCATNAGCCTCGGCACTAGTGACACTGTATTTATGATCACTAAAGATCCTAATCCAGGATTAGAGGGACATGTCTTCCCTAATCCAGTTGATGCAGAAGGTTACATGGTAATGTTGGTATACAAAAATGGGTCCCTTACCCGAGAAGGTGGAAAGTTAGGTTTCTACTACAAGGAGCATGAAATTCTACCTCCTCTTCCAGTTGGTTACCACCGCTATGCCATAGAAAATTTCTCAGGCACACTGGATGGAATGAAGGAGCAAGAAGTGAAAGAGTTTGACCCTCCATCTGAGGTACGGGCATTAATTGAGGGTCAATTTCTCTCNATGCGAGCTCATGCTGAAAGATTTGGCATGCCTTCTCCTCCAAAGCGAATTATAGCCACTGGTGGAGCGTCGGCAAATCATTGCATTCTCGGCTCGATTGCTTCTATTTTTGGCTGTGATGTCTATACAGTTCAAAGACCTGATTCAGCTTCTCTTGGAGCNGCGTTGAGAGCTGCTCATGGCTGGCTCTGCAACAAGAAGGGCAGTTTCTTACCCATATCAGATATGTACATNGACAAATTGGAGAAAACATCTCTAAGCTGCAAACTTTCGGTGAATGCTGGAGATCAGGAGCTGGTTTCCAAGTATGCTGCTTTCATGAAAAAGAGAATTGAGATAGAGAATCGTCTCGTTCAAAAGCTTGGACGCTGTTGAAATACTTGTTATTTAGGTCTGAATTATTTGCTGGAAAGGACAGATCCTTGCCTTGAGTTCCCTGTGAATAGAATAAAGGGAGAGAATAAAGTGATTACATAAGTTTAAGCACGGCACATGCATTTTTTTCTTCTATTATGATAGTAATGATTGGTCAGTTTTACCTTCGTAATGTTTTGAACTGGTCCCTTCACGTGGATGAATGTGTAAATTCTGATTTCTAGCTGACAATATACCACCAAGCCAAATCGAAAATAACATGTGCTGGATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	281342	285530	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00854	xylB, XYLB	EC:2.7.1.17	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000011s00000673.1	PF00370.16	FGGY_N	11	112	2.20E-06
Glyur000011s00000673.1	PF00370.16	FGGY_N	134	287	3.20E-15
Glyur000011s00000673.1	PF02782.11	FGGY_C	300	469	2.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.984
SRR1783600	control	12.026
SRR1783602	moderate drought stress	11.745
SRR1811619	moderate drought stress	11.805

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.899
DRR006520	Root Summer glycyrrhizin high producing strain	13.972
DRR006521	Root Winter glycyrrhizin high producing strain	11.480
DRR006522	Root Winter glycyrrhizin high producing strain	11.689
DRR006523	Root Summer glycyrrhizin low producing strain	13.900
DRR006524	Root Summer glycyrrhizin low producing strain	13.526
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.544
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.816

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.264
SRR2868004	Drought Stress (root)	23.596
SRR2967015	Control (root)	27.239

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.023
SRR9715740	Leaf	18.907
SRR9715741	Leaf	17.994
SRR9715739	Root	8.192
SRR9715742	Root	11.579
SRR9715743	Root	11.174

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.730
SRR8749028	MeJA induced 9h	23.845
SRR8749029	MeJA induced 9h	17.616
SRR8749030	Uninduced	34.799
SRR8749031	Uninduced	38.425
SRR8749032	Uninduced	30.599

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.880
SRR8400027	Control - Root	17.899