Gene detail information of Glyur000011s00000666 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17870.1 | 9.00E-19 | plastid-specific 50S ribosomal protein 6 |
| NR | P11892.1 | 1.50E-36 | RecName: Full=50S ribosomal protein 6, chloroplastic; AltName: Full=CL25; AltName: Full=Plastid-specific 50S ribosomal protein 6; Short=PSRP-6; Flags: Precursor [Pisum sativum] |
| Swissprot | tr|P11892|PSRP6_PEA | 7.00E-39 | 50S ribosomal protein 6, chloroplastic (Precursor) |
| trEMBL | tr|V7AVE6|V7AVE6_PHAVU | 1.00E-34 | Uncharacterized protein {ECO:0000313|EMBL:ESW09265.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00011 | 230269 | 230580 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.612 |
| SRR1783600 | control | 13.069 |
| SRR1783602 | moderate drought stress | 20.270 |
| SRR1811619 | moderate drought stress | 20.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.316 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.737 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.571 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.574 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 82.449 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 76.687 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1178.529 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1179.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 83.057 |
| SRR2868004 | Drought Stress (root) | 59.209 |
| SRR2967015 | Control (root) | 55.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 622.477 |
| SRR9715740 | Leaf | 555.471 |
| SRR9715741 | Leaf | 332.615 |
| SRR9715739 | Root | 42.104 |
| SRR9715742 | Root | 28.788 |
| SRR9715743 | Root | 29.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 62.325 |
| SRR8749028 | MeJA induced 9h | 29.679 |
| SRR8749029 | MeJA induced 9h | 34.700 |
| SRR8749030 | Uninduced | 26.239 |
| SRR8749031 | Uninduced | 6.993 |
| SRR8749032 | Uninduced | 50.132 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 52.295 |
| SRR8400027 | Control - Root | 52.815 |