Gene detail information of Glyur000011s00000660 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10030.1 | 2.00E-49 | homolog of yeast ergosterol28 |
| NR | NP_001236301.1 | 3.26E-68 | uncharacterized protein LOC100499807 [Glycine max] |
| Swissprot | tr|O80594|ERG28_ARATH | 2.00E-62 | Ergosterol biosynthetic protein 28 |
| trEMBL | tr|C6SWW5|C6SWW5_SOYBN | 1.00E-68 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G09400.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00011 | 207124 | 209511 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000011s00000660.1 | PF03694.8 | Erg28 | 1 | 102 | 5.00E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.629 |
| SRR1783600 | control | 15.699 |
| SRR1783602 | moderate drought stress | 8.999 |
| SRR1811619 | moderate drought stress | 7.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.357 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.899 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.485 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.938 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.045 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.525 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.533 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.436 |
| SRR2868004 | Drought Stress (root) | 13.712 |
| SRR2967015 | Control (root) | 16.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.328 |
| SRR9715740 | Leaf | 5.558 |
| SRR9715741 | Leaf | 2.853 |
| SRR9715739 | Root | 5.890 |
| SRR9715742 | Root | 5.786 |
| SRR9715743 | Root | 7.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.559 |
| SRR8749028 | MeJA induced 9h | 16.855 |
| SRR8749029 | MeJA induced 9h | 17.837 |
| SRR8749030 | Uninduced | 4.432 |
| SRR8749031 | Uninduced | 3.069 |
| SRR8749032 | Uninduced | 4.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.422 |
| SRR8400027 | Control - Root | 18.300 |