Gene detail

Gene detail information of Glyur000011s00000645.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25930.1	0	Protein kinase family protein with leucine-rich repeat domain
NR	XP_004501091.1	0	PREDICTED: receptor-like protein kinase HSL1-like isoform X1 [Cicer arietinum]
COG	YP_004775215.1	6.00E-50	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	0	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|G7J3I8\|G7J3I8_MEDTR	0	Leucine-rich receptor-like kinase family protein {ECO:0000313\|EMBL:AES73895.1}

Sequence

Transcript Sequence

>Glyur000011s00000645.1
TGGTGGTATGTCATATCTAGTCTAGTATGTAATTTTAACTAACCCAAGTTATCGCCAATTGGCCATCACAATATAATTATGCCATAAAATCAGTCGTGTTTGAACAAAACTCTTTTANTGTAATGAAGTTAATTGTCGTCTTGCTTCCATCATTTCCAGTATCACACTCGTCCTTGAAGTTTATTGCTCCAAAGCCTTCATTTTCTTAGTGGTTATATTAACTAGTAAGACATTCGCATACATCATACATACTCGAGAGTGGAGACAGAACTAGCAGCTCCCCATGTTTGAATTTTGACCGCAAGTTTAGCCATAANTTCGCGGCAAAATCCCCAGCCGGAGCGTCCTAACCCGTCGTATGAAATGTCCGAAATACCCCTCATCGTGCTGAAATTCCCATTTTATTTGTTCCTCTTGCTCAGCGTCACGGTACCCTGCCAAGTAATTTCGCAAACCACAGCCACCGAAGAAACAATCCTACTGACTCTAAAACGCCAACTGGGGGATCCACCGTCTCTCCGATCATGGAAACCTTCACCGCCGTCGCCGTGCGACTGGACGGAGGTCCGGTGCACCAGCGGCGCCGTCACGGAGCTCCTCCTCCCGAGCAAAAGCATCACCGCACCGAATCTCCCGGCCACAATCTGCGACCTGAANAACCTGACCAAGCTGGACCTCTCCAACAACTCCATCGCCGGCGGGTTTCCGACGTCACTGTACAACTGCTCCAACCTCCGGTTCCTCGACCTTTCCCAGAACTACCTCGCCGGCCCAATCCCNTCCGACATCGACCGTCTCAAATCGCTGATGCACCTCAACCTCGGCGGCAACAGCTTCATCGGCGACGTCCCGGCGGCGATCGGTAGGNTCCCGGAGCTTCAAACGCTGCACCTCTTTCAGAACAACTTCAACGGAACCTTCCCGAAGGAAATCGGGGACCTGTCCAAACTCGAAACCCTGGGCCTGGCCAATAACTTCAGGCTCAGGCCCACGTCGATCCCCTTGGAGTTCGGTAACCTGAGGAACGTGAGGTTCATGTGGATGTCACAGTGTAACTTGATCGGAGACATTCCAGAAAGCTTCATGAACCTCACGAAACTGGAGCAGTTGGATCTGTCGGTGAACAATTTGACAGGGAGCATTCCTGGGAGTCTGTTCTCGCTAAGGAACTTNACGTTTTTGTATCTATACCGTAATAGGTTGTCGGGTGTGATACCCAGTTCGGTGCAGGCCTTGAATTTGATCCAGATAGACTTGGCCATGAACAATTTGACGGGTCCCATACCCCAAGAGTTCGGAAAGTTGCAGAATTTGATGATACTGCACTTGTATTCGAATCAGCTCTCTGGTGAGATTCCCAGCGGTTTGGGTCTAATTCCAAGTCTCAGGAACTTGAGGGTTTTCGGGAATAAGTTGAATGGAACACTGCCTCCGGAACTAGGCCGTTATTCGAAGCTTGTGGCGTTTGAAGTTGCTGATAACCAACTCGTTGGTGGGTTACCGGAAAAGTTGTGTGCCGGTGGTGCTTTACTTGGTGTCATTGCATTTTCCAACAATCTCAGTGGAGACTTGCCTCAGTGGCTTGGGGATTGTGCTTCTCTTACCACCGTTCAGCTTTACAANAACAAGTTTTCAGGGGAGGTTCCTTTGGGTTTGTGGACTTCAAGGAAACTGTCCACCTTGATGTTAAGCAACAACTCCTTTTCTGGTCAACTTCCGGGTAAACTATCTTGGAACATGTCGAGACTTGAGATCAGGAACAACAATTTTTCCGGTCAGATATCTCTTGGAGTTTCCTCCGCCGTGAATCTTGTGGTTTTTGACGCGAGAAACAACATGCTTTCTGGTGAATTCCCGAGGGAATTGACGGNTCTTTCTCGGCTTACCACTCTCATGCTTGATGGGAATCAACTTTCCGGTTCACTTCCATCGGAGATAATCTCATGGCAATCACTGAACACACTAACACTCTCAAGAAACAAACTTTCCGGCCAAATCCCCATGGCTATGTCTTCTCTTCCTAATCTTGTTTACTTGGAATTGTCTGAAAATGATTTATCCGGTGAAATCCCACCTCAGCTTGTCAAATTGAGGTTTATTTTCCTCAACCTTTCCTCCAACAACCTTTCCGGGAACATCCCTGATGAGTTCAACAACCTCGCATATGAAAACAGCTTCTTGAACAATTCTCATCTATGTGCCCAGAATAAAAGATTCAATCTTTCCAGCTGCTTGAGTACCGAAACCACAAAACCACACTCCAGCAATTCGTCTTCGAAATTCCTTGCCCTGATTCTTGCTGTCACCATCACTGTGTTGCTGGCCGCCACCGCCTCCTTGGCCTTATACGCNTTGAAGAAGCACTTTTGGGGCAAGAAGCGCTGCGGGCGTAAGATCTCAACATGGAGGCTTACCTCATTCCAGAGGCTTGATCTCACGGAAATAAACCTCTTCTCAAGTTTGACAGAGAATAACCTCATAGGAAGTGGAGGATTTGGGAAAGTTTACCGTGTAGCTTCTTCCAATCGTCCGGGTGAGTANGTTGCGGTAAAAAAGATTTGGAATCGCAGAGATGAGGTGGTGGATGAAAAGCTGGAGAAAGAATTCATGGCTGAGGTTGAGATCCTTGGCAGTATTCGGCATTCCAATATAGTGAAGCTTTTGTGCTGTTATTCCAGTGAGAACTCCAAACTTCTTGTTTATGAATACATGGAAAACCAGAGCCTGGACAAATGGATTCATCGAAAGAAGAAGACACCGGCATTGGTGTTGAGTTGGCCAACGAGGTTGAAAATCGCCATTGGGGCTGCACAAGGCCTGTGTTACATGCACCATGAATGTTCATCGCCAATCATCCACCGAGATGTCAAGTCTAGCAATATACTTCTTGACTCCGAGTTCAGGGCGAGCATAGCAGATTTTGGGCTCGCCAAGATGTTGGCGAAGCATGGGGAACAATACACCATGTCTGCTCTAGCAGGGTCTTTCGGCTACATTCCACCTGAATATGCCTATTCAACCAAGATTGACGAGAAAGTTGATGTGTATAGCTTTGGAGTTGTGCTCCTAGAGCTNGTGACGGGAAGAGAGCCTAATAATGGGGGCGAGAATGCATGCAGCCTAGTTGAATGGGCATGGCAACATTATAGTGAAGGGAAGTGCATCACTGATGCGTTTGATGAGGAAATCAGAGAGGCACGTTATGCAGAAGAGATGGCTAGCGTCTTCAAATTAGGCCTCATCTGCACGAGCTCGTTACCCTCAACTAGGCCTTCTGCAAAGGAGGTTTTGCAAGTTCTTCGTCGGTGTTGTTCTTCGGGTTCTGCACGGAAAAGTGTGGCAACTGAGTTTGATATCATTCCTCTTCTTGGCGAAACGACGTACATTTCCAGTTACAAGGATAGTAGAACCGTAAGCCAAAACGAAGAAAGCTGCTTATATAGTGTCTAACTAGCGATAGTATTCCACGCAAAGAATAATTCGAAATAATAAGACAATGTAACTACTGGTCTTCAGACGAAACCACAGAAGTATTATACTGAAAATATGGT

Protein Sequence

>Glyur000011s00000645.1
MSEIPLIVLKFPFYLFLLLSVTVPCQVISQTTATEETILLTLKRQLGDPPSLRSWKPSPPSPCDWTEVRCTSGAVTELLLPSKSITAPNLPATICDLXNLTKLDLSNNSIAGGFPTSLYNCSNLRFLDLSQNYLAGPIPSDIDRLKSLMHLNLGGNSFIGDVPAAIGRXPELQTLHLFQNNFNGTFPKEIGDLSKLETLGLANNFRLRPTSIPLEFGNLRNVRFMWMSQCNLIGDIPESFMNLTKLEQLDLSVNNLTGSIPGSLFSLRNXTFLYLYRNRLSGVIPSSVQALNLIQIDLAMNNLTGPIPQEFGKLQNLMILHLYSNQLSGEIPSGLGLIPSLRNLRVFGNKLNGTLPPELGRYSKLVAFEVADNQLVGGLPEKLCAGGALLGVIAFSNNLSGDLPQWLGDCASLTTVQLYXNKFSGEVPLGLWTSRKLSTLMLSNNSFSGQLPGKLSWNMSRLEIRNNNFSGQISLGVSSAVNLVVFDARNNMLSGEFPRELTXLSRLTTLMLDGNQLSGSLPSEIISWQSLNTLTLSRNKLSGQIPMAMSSLPNLVYLELSENDLSGEIPPQLVKLRFIFLNLSSNNLSGNIPDEFNNLAYENSFLNNSHLCAQNKRFNLSSCLSTETTKPHSSNSSSKFLALILAVTITVLLAATASLALYALKKHFWGKKRCGRKISTWRLTSFQRLDLTEINLFSSLTENNLIGSGGFGKVYRVASSNRPGEXVAVKKIWNRRDEVVDEKLEKEFMAEVEILGSIRHSNIVKLLCCYSSENSKLLVYEYMENQSLDKWIHRKKKTPALVLSWPTRLKIAIGAAQGLCYMHHECSSPIIHRDVKSSNILLDSEFRASIADFGLAKMLAKHGEQYTMSALAGSFGYIPPEYAYSTKIDEKVDVYSFGVVLLELVTGREPNNGGENACSLVEWAWQHYSEGKCITDAFDEEIREARYAEEMASVFKLGLICTSSLPSTRPSAKEVLQVLRRCCSSGSARKSVATEFDIIPLLGETTYISSYKDSRTVSQNEESCLYSV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	111638	115283	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000011s00000645.1	PF08263.7	LRRNT_2	35	70	7.10E-08
Glyur000011s00000645.1	PF13855.1	LRR_8	99	157	1.50E-07
Glyur000011s00000645.1	PF13855.1	LRR_8	221	280	1.30E-07
Glyur000011s00000645.1	PF13516.1	LRR_6	314	336	0.67
Glyur000011s00000645.1	PF13855.1	LRR_8	505	565	1.60E-07
Glyur000011s00000645.1	PF00560.28	LRR_1	580	599	0.66
Glyur000011s00000645.1	PF00069.20	Pkinase	703	977	5.60E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.724
SRR1783600	control	6.792
SRR1783602	moderate drought stress	10.248
SRR1811619	moderate drought stress	10.134

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.153
DRR006520	Root Summer glycyrrhizin high producing strain	2.158
DRR006521	Root Winter glycyrrhizin high producing strain	18.634
DRR006522	Root Winter glycyrrhizin high producing strain	17.971
DRR006523	Root Summer glycyrrhizin low producing strain	1.927
DRR006524	Root Summer glycyrrhizin low producing strain	1.806
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.516
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.509

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.719
SRR2868004	Drought Stress (root)	19.534
SRR2967015	Control (root)	13.820

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.756
SRR9715740	Leaf	5.393
SRR9715741	Leaf	10.184
SRR9715739	Root	10.150
SRR9715742	Root	18.993
SRR9715743	Root	17.832

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.838
SRR8749028	MeJA induced 9h	60.428
SRR8749029	MeJA induced 9h	21.657
SRR8749030	Uninduced	28.370
SRR8749031	Uninduced	16.596
SRR8749032	Uninduced	21.883

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.477
SRR8400027	Control - Root	6.573