Gene detail information of Glyur000011s00000643 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G58360.1 | 2.00E-127 | amino acid permease 1 |
| NR | AES73893.2 | 0 | transmembrane amino acid transporter family protein [Medicago truncatula] |
| Swissprot | tr|Q42400|AAP1_ARATH | 1.00E-168 | Amino acid permease 1 |
| trEMBL | tr|G7J3I6|G7J3I6_MEDTR | 0 | Transmembrane amino acid transporter family protein {ECO:0000313|EMBL:AES73893.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00011 | 87915 | 93911 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000011s00000643.1 | PF01490.13 | Aa_trans | 16 | 189 | 4.50E-43 |
| Glyur000011s00000643.1 | PF01490.13 | Aa_trans | 222 | 422 | 1.70E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.509 |
| SRR1783600 | control | 6.844 |
| SRR1783602 | moderate drought stress | 8.921 |
| SRR1811619 | moderate drought stress | 9.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.477 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.778 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.062 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.467 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.457 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.485 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.764 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.896 |
| SRR2868004 | Drought Stress (root) | 8.863 |
| SRR2967015 | Control (root) | 10.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.532 |
| SRR9715740 | Leaf | 13.542 |
| SRR9715741 | Leaf | 12.176 |
| SRR9715739 | Root | 1.658 |
| SRR9715742 | Root | 6.035 |
| SRR9715743 | Root | 6.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.502 |
| SRR8749028 | MeJA induced 9h | 0.278 |
| SRR8749029 | MeJA induced 9h | 0.227 |
| SRR8749030 | Uninduced | 1.439 |
| SRR8749031 | Uninduced | 0.555 |
| SRR8749032 | Uninduced | 0.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.277 |
| SRR8400027 | Control - Root | 7.263 |