Gene detail

Gene detail information of Glyur000011s00000642.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G25840.1	2.00E-143	Nucleotidylyl transferase superfamily protein
NR	XP_003527850.1	0	PREDICTED: tryptophan--tRNA ligase, mitochondrial-like [Glycine max]
COG	YP_003888794.1	6.00E-140	tryptophanyl-tRNA synthetase [Cyanothece sp. PCC 7822]
trEMBL	tr\|I1K9G7\|I1K9G7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G09240.1}

Sequence

Transcript Sequence

>Glyur000011s00000642.1
ACAATGAGCGCGGAGTAAGAAGTAGGAGGAAGAAGAAGAGAAGAGAACATGGGTGCTTCTTCTCATTACGCGGTCCTATCATACTTCGCCCCTTCGCTGTCTTGTGCTTCAACCTTCCTTCGTTCTCGCCTCAGATTCAGAGACCCATGCATCCGATGTTGTGCCACTCTATCTGCTACCTCTTCAGAGACTCCCACCCCGACTCCAACCTCCGTGAAGAAACGAGTAGTGTCGGGAGTTCAGCCCACGGGCTCAATTCACCTTGGAAACTATTTTGGCGCCATTAAGAATTGGGTTGCCCTCCAGGATGTGTACGATACACTTTTCTTCATCGTGGACTTGCATGCAATTACNTTACCTTATGACACACAACAATTACCTAAGGCTACAAGGTCAACTGCAGCCATTTACCTGGCATGTGGGGTGGATCCTTCAAAGGCTTCAGTTTTTGTACAGTCTCATGTTCGTGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAACACCAATCGGTTGGCTGAACAAAATGATACAGTTTAAAGAAAAATCTCGCAAGGCGGGAGACGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTTTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTTCCTGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACCCCCGAGGTGGTGCTATATTTAAGGCAAGTTCCAGAACCCCTTATACCTCCAGCTGGAGCCCGGATTATGTCCCTAACTGATGGCCTGTCGAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCCAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCAGGCATGGAATTTGACAATTCCGAGAGGCCTGAATGTCNTAATCTTCTTTCCATATACCAGCTCATTTCTGGAAAGACAAAAGAGGAAGTTATGCAGGAATGCCAAAACATGAACTGGGGCGCATTCAAAGCTCTTTTAACNGATGCCTTGATTGATCATTTGCAACCCATTCAGGTTCGCTATGAAGAAATCATGTCAGATTCAGGTTATTTAGAGGAAGTTTTGGCAGAAGGTGCTAGAAATGCAGCAGATATAGCGGATGCCACACTTCATAATGTTTATCAAGCAATGGGATTTTTGAGGAGACAGTGATGATTGATGATGCTAAGCAAAAATAAACNATAAGATTGATGAGGAAGCTACTTAAAAGCTAACTTTTGGATGATTCATCAGGCCTCAATACTTTGGAATAATCTCATGGGCATATACTCGACTACCGGAAGTGGAAAGATTATTTGATGCAAAGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	75155	82491	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01867	WARS, trpS	EC:6.1.1.2	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006436 tryptophanyl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004830 tryptophan-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000011s00000642.1	PF00579.20	tRNA-synt_1b	58	332	1.70E-79

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.369
SRR1783600	control	12.331
SRR1783602	moderate drought stress	12.006
SRR1811619	moderate drought stress	11.471

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.178
DRR006520	Root Summer glycyrrhizin high producing strain	10.109
DRR006521	Root Winter glycyrrhizin high producing strain	16.016
DRR006522	Root Winter glycyrrhizin high producing strain	15.016
DRR006523	Root Summer glycyrrhizin low producing strain	12.961
DRR006524	Root Summer glycyrrhizin low producing strain	12.267
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.878
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.677

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.697
SRR2868004	Drought Stress (root)	17.723
SRR2967015	Control (root)	20.058

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.432
SRR9715740	Leaf	27.161
SRR9715741	Leaf	20.489
SRR9715739	Root	4.280
SRR9715742	Root	7.825
SRR9715743	Root	7.332

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.458
SRR8749028	MeJA induced 9h	14.225
SRR8749029	MeJA induced 9h	13.075
SRR8749030	Uninduced	4.769
SRR8749031	Uninduced	4.583
SRR8749032	Uninduced	4.142

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.756
SRR8400027	Control - Root	25.807