Gene detail

Gene detail information of Glyur000011s00000634.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G25760.2	0	Protein kinase family protein
NR	XP_003523751.1	0	PREDICTED: uncharacterized protein LOC100779382 isoform X1 [Glycine max]
COG	YP_005321927.1	9.00E-13	peptidase c14 caspase catalytic subunit p20 [Saprospira grandis str. Lewin]
Swissprot	tr\|P42158\|KC1D_ARATH	1.00E-57	Casein kinase I isoform delta-like
trEMBL	tr\|I1JUX3\|I1JUX3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G09080.1}

Sequence

Transcript Sequence

>Glyur000011s00000634.1
ATGCCTGAGCTGCGTACCCGAACACGCAGAAACCGCCCTGCAGGTGACGCTAACCCGAGTCCGATTACCCAGCCACACTCGCCGGCGGTCGCCGGAACCCGCCCGAAGAGGAGAACCGCCGCTCAGGCGAGGAGGAATCGGAGGCAGAAGAACGTGATCGTCGCCGATGAAATCGTTAATATTGTGAATAACGACGACGCAGGGACTGATCGTGAAGGAGAGAATAAGAANGAAGGAATGGATGATTACGATAGCGGTGGCCGCAGCGCCGATAAGGCTCCCGGAGCCGAAGACGAAGGGAGCACAGCTCCCATTCCCGAGAAGGTCCAGGTTGGGGGTTCCCCATTATACAGAGTCGGCAGAAAACTTGGGAAGGGAGGATTTGGACAAGTCTATGTTGGTCGACGTGGGGGAACTGGTTCTGGCGCTCTTGAGGTAGCTTTAAAATTTGAGCATAGAAGCAGCAAGGGGTGCAATTATGGACCTCCTTATGAGTGGCAGGTTTACAATGCATTAGGTGGTAGTCATGGTGTTCCACGAGTACATTACAAGGGACGGCAAGGTGACTACTATATTATGGTCATGGATATGCTTGGCCCTAGTCTATGGGATGTTTGGAATAACAACTCACACACGATGTCTACAGAAATGGTGGCATGTATTGCAATCGAGGCTATCTCCATATTAGAGAAGATACATTCTAGAGGATTGGATATGGGGCAGCATGCTTTATATGTGCATGGTGATGTAAAACCTGAGAACTTTTTGCTTGGGCCCCCGGGAACTCCTGATGAGAAAAAGTTGTTTCTGGTTGATCTTGGATTAGCAACTCGGTGGCGTGACAGTTCAACTGGCCTTCATGTTGACTATGATCAACGTCCAGACGTATTTAGGGGCACAGTTCGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACTGGTAGCAGGAGAGATGACCTGGAATCTCTTGCTTACACACTTGTCTTCCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGGTTANCATTGGAGAAAATAAAGGATTTCTCGTCTGCAAGAAAAAGATGGCAACTTCTCCAGAAACTTTGTGTTGCTTTTGTCCTCAACCTTTCCGGCAGTTTGTTGAATATGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCTAAATATATATCTCTTTTTGATGGAATTGTGGGTCCAAATCCTGACATTAGACCAATAAATACTGAGGGTGCTCAGGAGGTACTTGCTGCTATTAGTACTTTGGAATTTGTGTTATATCACTTGCAGATTNGGAATCTGACTCTTGCTACACTTTTCTGGGCTTGTGTTGTGAAGCTTATATGTCAGGTTGGACACAAGAGAGGGCGATTGACCATGGAAGAGGATGATGATGAACAACCAAAGAAGAAGGTCCGAATGGGAATGCCAGCAACGCAGTGGATTAGTGTTTACAATGCTCGTCGACCAATGAAACAAAGGTATCATTACAATGTGGCTGATGTGCGGCTGTCCCAACACATTGAGAAAGGAAATGAAGATGGTTTATTTATTAGCAGTGTGGCTTCTAGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTTACGAACTCTCTTCCTGTTTTCTTCACAAGGAATGGATAATGGAACAGTGGGAGAAGAATTATTACATCAGTGCCATAGCTGGAACTACTAATGGCTGCTCTTTGGTTGTAATGTCTAAAGGGACCCAGTACTTGCANCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAATGGATCAACAAAAAGTGGAGAGAAGGATTTTACGTCACTGCTATGGCCACTGCTGGCACTANATGGGCAATTGTTATGTCCCGTGGTGCTGGGTTTTCAGACCAGGTTGTGGAACTTGATTTCCTATACCCTAGTGAAGGTATTCATCGACGGTGGGATAATGGTTACCGCATTACCTCAACTGCTGCAACATGTGATCAAGCTGCGTTTGTTCTAAGTGTCCCAAGAAGAAAACCGGCTGATGAAACTCAAGAGACACTCCGCACATCTGCTTTTCCTAGCACTCATGTCAAGGAAAAATGGGCAAAGAACCTTTATATTGCATCTATTTGTTATGGGAGAACAGTTTCATAAACAGCTGATATTTTTTGAGGTTCCAGCTGACCTCATTTTGACCTTGTGTGATCCTGCTTGCCCATACATCTTTCAGTTGGGGAATAGAGATCCTATCTGACAAATTTTCTGAACAATGCAGTTCAGCCTTGATTATCCAAAGTCTGCATGATGGGCTTCTCCTGGTGACTCATTCTACATGACTGGGTGCTTATTTTGTTTGGTTATTTTTCTAACATCAAACACTGCAAGATGCACTTCTGATTCTTACGAGAAGTTGGCTTTCTTGGGTGAGAAGTTACTTCCAGTATACCTCGTCATTTTTGACTTGTGGTATTACCTGAAGAGTTTACCGGGACTTATGAAACAGAAATTCAGGCTGTTTGGATCTTCATTTAACTTCTGCTGCTGTGGTAACTTGTGGATTTTTCTGGTTGTTCAAGACCATGATTATGATGCTGAAGCAACCCTCATGTNAGACAAAATCGGAAAAGCTGTTCAAGGATCTGGGTTTTTGGTACATTTTCACCCTTTCTGCTACGGAGAAACATGAGATTGTCAGAAACATGTCAGCTTGCTCTGGTTTCTTCTTCAGGGGTCTTTTCACTGCCCATGCTATTGAAGTTTGAAGCAATTGGGATGATTGTGAATGATTTGAGTTCACCGTTGAAGAGAAATTTGATGCATGCAGCCACCATCAATGTCAACCCTTGAAGCTGAGTTNTCCAAGCTCTGAGTCCCACATCTCCGTCCTACAACCCTCCTCGATCACTGCCTCCACAAGCTCTCCAATGCCCAATCGTAGAAACACCAAAATCTACTTGCAATTGATGCGATTTTCCCACAGCCTCAATGTTTTTGACACGCAAGAAAAGCTTTCAACGTGAAACCNTTCAAATCCAACCAGACAGCATCATCCATAGCCACTCTTGCCGTCGCTCAAACCACAGTGTGAATTGTAGCACCTCNTTGTTCCTTTGACACATCGGCTATCGTCGCCCCACAGCATTGCTCCATCCATGCTTGCCTTGTCTGCCCTTTTAGCGATCATTCATCGTCCCTATTTGTTCTGTTAGGTTTGTGTTTTCCCCCGATATTCTACGTTTTTTTTTATCCACCCGTTATTCTACGTTATATAGTAGATGAGGTACAGTTCTTTCATTTTTTTTTGGTGAACCCTGAAGTTACGATCCACTTAGGGGCTGGTACAGTTCTTTCATGTGGGTCTGGTAAATGTGTTTTGCAATTTTCCTATGACTACTGTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	28324	35028	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:3.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000011s00000634.1	PF00069.20	Pkinase	117	384	1.10E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.298
SRR1783600	control	19.752
SRR1783602	moderate drought stress	26.522
SRR1811619	moderate drought stress	26.163

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.929
DRR006520	Root Summer glycyrrhizin high producing strain	22.418
DRR006521	Root Winter glycyrrhizin high producing strain	35.709
DRR006522	Root Winter glycyrrhizin high producing strain	34.207
DRR006523	Root Summer glycyrrhizin low producing strain	20.394
DRR006524	Root Summer glycyrrhizin low producing strain	19.613
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.022
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.072

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.024
SRR2868004	Drought Stress (root)	37.496
SRR2967015	Control (root)	35.359

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.022
SRR9715740	Leaf	20.263
SRR9715741	Leaf	20.143
SRR9715739	Root	6.522
SRR9715742	Root	19.232
SRR9715743	Root	17.598

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.414
SRR8749028	MeJA induced 9h	23.093
SRR8749029	MeJA induced 9h	15.340
SRR8749030	Uninduced	21.206
SRR8749031	Uninduced	23.575
SRR8749032	Uninduced	19.909

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.843
SRR8400027	Control - Root	27.672