Gene detail

Gene detail information of Glyur000011s00000629

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11650.1	8.00E-150	alpha/beta-Hydrolases superfamily protein
NR	XP_004501143.1	0	PREDICTED: monoglyceride lipase-like [Cicer arietinum]
COG	YP_006807171.1	1.00E-51	putative hydrolase (modular protein) [Nocardia brasiliensis ATCC 700358]
Swissprot	tr\|Q9C942\|CSE_ARATH	2.00E-42	Caffeoylshikimate esterase
trEMBL	tr\|I1JUW8\|I1JUW8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G09040.1}

Sequence

Transcript Sequence

>Glyur000011s00000629.1
AGGGACGCCACGTGTCCAGTCGCAGCCAATCAGGTCATAAAAAACGCAACGAGTATTGGCTGTACGACAGATTATCACCGTTCGTTTCCACGTCCCGAACTCCGATGCGAACAATGGTTATCTTTTACTTTTTCTGTGTCTAAAGGAGACAGATAACATTTTCATCAGGAAATATAAGCCGTCAGATCTTCTGGTCCAAGTAAGCAAACGGATAGGATTAGTTCAGCAACAAGTATAAATATACACACAACTGTGTCAAACCAGAAAAACGCGATTGCCTTGTGTTGTTGTTATTGTGCTGTTCTGTCTGTGTGCTGTGTCTGTGTGGGATCCCAATTCCATTTTCCGCCTCCATCCTCCACCGCCGAGAGCGATGTCTTCCGCCGAGGTGGGGATGGAGCCACTGACATCGGGAGCGAGCAACCGCATAATTCCGATTCTGAAAGCTCTAAGGGCCTCTCTCATCTTCGTCTACACCTTCTTCCTCTCCTNCCTCCTCTTCGTCCTCCCTTGGCGGCGAGTACCTACCTCTCCGAGGAAGCATTTGAAGCGCCGGTGGTTGGTTCGGGAAGAAGAGGACACCTTCAGGAGAAGAGCGTTGGCACAAGACGTTGGAATGGGTCGCGATGACGGTTGCTGCCGATGGAACACTTCCATCTTCTATGGGGTTAGAAACAACGCTCTCTTTTGCCGCTCCTGGTTCCCCGTTTCCGGTGATCTCAAGGGCATTCTGATCATCATTCACGGGCTTAATGAACACAGTGGAAGATATGCCGACTTCGCAAGGCAATTAACATCATGCAACTTTGGTGTCTATGCAATGGACTGGATAGGTCATGGAGGTAGTGATGGATTGCATGGTTATGTTCCTTCTCTTGATCATGTGGTTGCAGACACAGGGGCTTTCTTGGAAAAGATTAAATCAGAGAATCCTGGGATACCGTGCTTTCTCTTTGGTCACTCCACTGGAGGGGCTGTGGTTTTGAAAGCGGCTTCCCACCCTCATATTGAAGTGATGGTGGAAGGAATTATATTAACCTCACCTGCTTTGCGTGTGAAGCCAGCTCACCCAATTGTTGGTGCTGTTGCTCCAATTTTTTCTCTGGTAGCTCCGAAGTTCCAATTCAAAGGAGCAAACAAAAGGGGCATTCCAGTTTCGAGGGATCCGGCAGCTTTGGTGGCNAAGTACTCCGATCCTCTAGTCTACACAGGACCTATAAGGGTCCGAACTGGCCATGAAATATTGCGTATAACCGCTTACTTGATGCGAAACTTCAAGTCTGTGACGGTNCCGTTCTTCGTCCTGCACGGAACTGCTGACAAGGTAACTGATCCATTGGCCTCACAAGATCTATACAATAAGGCAGCTTCNGAGTTCAAAGATATAAAGCTTTATGATGGCTACTTGCACGACCTTCTCTTTGAGCCTGAGCGTGAAGAGATAGCTCAGGACATTATCAACTGGATGGAAAATAGATTATTTGCTATTTGAAAATGTCAATAATTGGGGTGGGGGTGCTAATAAGAATGTCAAGGCAAAGAGAAAAAAAGGGTGGATGTCAACTACCAATGTTGGCAACTGTAGAAATTGAATTCGCCCCGGAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	9581	13744	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000011s00000629.1	PF12146.3	Hydrolase_4	102	179	2.50E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.762
SRR1783600	control	29.507
SRR1783602	moderate drought stress	24.233
SRR1811619	moderate drought stress	24.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.344
DRR006520	Root Summer glycyrrhizin high producing strain	33.267
DRR006521	Root Winter glycyrrhizin high producing strain	18.519
DRR006522	Root Winter glycyrrhizin high producing strain	17.741
DRR006523	Root Summer glycyrrhizin low producing strain	76.810
DRR006524	Root Summer glycyrrhizin low producing strain	75.368
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.582
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.232

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.092
SRR2868004	Drought Stress (root)	59.576
SRR2967015	Control (root)	43.301

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	73.634
SRR9715740	Leaf	55.564
SRR9715741	Leaf	87.138
SRR9715739	Root	94.688
SRR9715742	Root	73.644
SRR9715743	Root	76.513

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	100.762
SRR8749028	MeJA induced 9h	101.724
SRR8749029	MeJA induced 9h	127.650
SRR8749030	Uninduced	274.776
SRR8749031	Uninduced	238.658
SRR8749032	Uninduced	190.500

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.500
SRR8400027	Control - Root	56.711