Gene detail

Gene detail information of Glyur000010s00000982

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55480.1	6.00E-92	protein containing PDZ domain, a K-box domain, and a TPR region
NR	XP_003629926.1	0	hypothetical protein MTR_8g088420 [Medicago truncatula]
COG	YP_001530300.1	6.00E-12	hypothetical protein Dole_2419 [Desulfococcus oleovorans Hxd3]
Swissprot	tr\|Q9SRY4\|LPA1_ARATH	4.00E-10	Protein LOW PSII ACCUMULATION 1, chloroplastic (Precursor)
trEMBL	tr\|B7FKN6\|B7FKN6_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK40788.1}

Sequence

Transcript Sequence

>Glyur000010s00000982.1
ACCCCTTCTTTGTGTCCACAACAACAATTCACAGTAGAGCTCAAAAGAGAAACAAAGTTTTGAGCACATAATAACCATGTCACTATCTATATCTACCACCTCTAGTGGTCACTCATCTCTTTACTCTGCACTTTCATTGCCAAGAGCCACTCAAATCCACTCCAAGCAAAACCCAACTCTGTTTTTTCCCACCACCAAGTTGTTTTCTTCCAGAAACCACTCATATTCAGGTGTTCCTTATGGTTTCTCAAACACCCTTTTGTCAAGGCCGTTCCTTTTTGAGGTTAGAGCTTCCTCTGAGGTTGGTTCAGAAGCATCCAAACAGGAGGAGAGTGGCAAGAGTGAAGGAGAGGAGGAGGAGCCNTATGAAGAGTATGAGGTAGAGCTGGACCAGCCTTATGGACTCAAATTTGTGAAGGGAAGGGATGGTGGAACTTACATTGATGCTATTGCACCNGGAGGATCAGCTGACAAGGCTGGAGTCGCTGTTTTTGGAACCGAAATTTGGCCAGCTGCAGAATACGGAAGGACAATGTACACAATTCGCCAAAGAATTGGCCCATTACTCATGAGAATGCAGAAGAGATATGGAAAGATAGAAACTGGTGGTGAGTTAACTGAAAAGGAGATTATCAGAGCTGAGAGGAACTCTGGTGTAATAAGTAACAGAGTGAGAGAAATTCAAATGCAAAACTACATTAGAAAGAAGGAAATGAAGGAGCGCAGAGAAAGGGATTTGAGAGAAGGGTTACGACTATATAAGAATGCCAAATACGAGGAAGCGCTAGAGAAATTCGAGTCTGTTTTGGGATCAAAGCCAGAACCTGATGAAGCAGCAGTTGCAAGTTATAATGTTGCGTGTTGTTACTCTAAGCTAAACCAGATTCAAGCTGCACTTTCTTCACTTGAAGAAGCTCTGAATGCTGGTTTTGAAGACTTCAAGAGAATCAGAACTGATCCTGACCTGGCCAACGTAAGGACGGCCGAGGAATTTGACCCGCTATTGAAAAGATTCGACGAATCATTTATCAATGAGAATGCCATTAATGCCATCAAATCTATTTTTGGCATATTTAATAATAAGAAATAATAACCCCTCTGTGGGGACACAAGCATACAGTTTAACTGACTAAGGAATTTGTTGAGCAATATGATTCCATTCCATGACATTTTATTTCCCCTTGTACAACTTTATAGTTAACTACAGGTCTCTTTTTTTTTTTTTTGCCCCTTCATTGGGGTCTTGTTTCATGTACTTGTATAATATAAGGAATTTATGATCAATAAAATTGTCCATTTTCCAACAATACCCCTATCACACCCAATAGCTGTTTCAGCCCCAAAAGAGTGCAAGCAGTTTGTTTTTCAAGGGTCCCATCTCCACAAAACCCCCCATTCCAGAAACATGTCACATGTATGGGTGGCTTGAATCAAGGACATTGTTCTTTTCTTGGTAATGTTACTTGGGCATGGTTACTAAGTGATCATGGCTTTTNGGATAGCATAGCATAGGGGTGATTTGAGTTTGTGTTAGATTCTGTTGCTTGTATTATTGTTAGGATGTGACACATGATCTTTTATCCGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	586821	590720	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000982.1	PF13432.1	TPR_16	221	281	4.70E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.026
SRR1783600	control	4.810
SRR1783602	moderate drought stress	6.729
SRR1811619	moderate drought stress	6.768

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.503
DRR006520	Root Summer glycyrrhizin high producing strain	4.558
DRR006521	Root Winter glycyrrhizin high producing strain	3.866
DRR006522	Root Winter glycyrrhizin high producing strain	3.828
DRR006523	Root Summer glycyrrhizin low producing strain	3.379
DRR006524	Root Summer glycyrrhizin low producing strain	3.204
DRR006525	Leaf Summer glycyrrhizin high producing strain	233.254
DRR006526	Leaf Summer glycyrrhizin high producing strain	232.253

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.560
SRR2868004	Drought Stress (root)	15.768
SRR2967015	Control (root)	8.999

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	198.326
SRR9715740	Leaf	231.909
SRR9715741	Leaf	187.691
SRR9715739	Root	0.885
SRR9715742	Root	3.795
SRR9715743	Root	4.332

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.401
SRR8749028	MeJA induced 9h	11.085
SRR8749029	MeJA induced 9h	6.683
SRR8749030	Uninduced	6.155
SRR8749031	Uninduced	1.449
SRR8749032	Uninduced	2.832

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.999
SRR8400027	Control - Root	16.807