Gene detail

Gene detail information of Glyur000010s00000976.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30500.2	2.00E-43	nuclear factor Y, subunit A7
NR	ACU19519.1	9.63E-104	unknown [Glycine max]
Swissprot	tr\|Q84JP1\|NFYA7_ARATH	5.00E-63	Nuclear transcription factor Y subunit A-7
trEMBL	tr\|C6TCG7\|C6TCG7_SOYBN	4.00E-104	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU19519.1}

Sequence

Transcript Sequence

>Glyur000010s00000976.1
CTTCTTTGTTATTCTAACTGAAGTTTGTTGTTTTTCTTACATTGATGACATTTTACTTGTTTCTTCATCCCACCCCAAGCACAAAAGTGCTGTCTGAACTTATGTAATGAAATGTTTATCCAGATAATGAAGACGATGGGCAGCAGCAGTCAGAATCACAAATGCAGTCTTCATCTGCAAATGTAATTTCTGATCCAGGTATTGGTACCCAGAATATTCAATATGCAGCACCTGGCCAGCTTGGAACCGGACATTCTATGGTACCTCCTGTGTACCCATATCCAGATCCTTACTATAGAAGCATCTTTGCTCCCTATGATACACAACCTTATCCCCTACAATCCTATGGTGGACAGCCAATGGCCCATCTTCAGTTAATGGGAATCCAGCAAGCCGGTGTTCCTCTGCCAACTGATGCTGTTGAGGAGCCTGTTTTTGTCAACGCAAAACAATATCATGGTATATTAAGACGTAGACAATCCCGTGCGAAAGCTGAATCAGAAAAAAAAGCTATAAGAAATCGGAAGCCATACTTGCATGAATCTCGACATCTGCATGCGCTGAGAAGAGCAAGAGGATGTGGTGGTCGGTTTCTGAATTCACAGAAAAATGAGAATCAACATAATGACATGGCATCACCTGACCAATCACAGTCCAATATCAACCTCAATTCTGATAAAACCGACCTATCTTCATCAGATAGGACATCCTAAAACTACAGAGATGACTTAGACAGCCGTGGGGGGGGGGGGGGGTACTTTTGTATATCACAAGACACAATAACAATAACACAGCCTCAGATATCTCACCGTTGCTTCATTGTGGTTTTGTACAACCATGTAGGTATAGGTTTTCTGTAGTAGGTATGATGAGATGTGCATGATGCTGGTAAAGTGTAGAGTCATTTTATCAAATATTTTCCTTTCTTGCCGTTTGGTAGGTGAGATTATTATTGTGTGAGCATTTCTTTGTATTTGGTACTGTAGAGAGGTTAGAGATTATCCGAAGCCATGTTTATTTATCTTGCTAGTGACACATTGACTGTTGTTGTATTTGTCAATGGATAGGATAGTTAAAGGAGTTTCAACCAATTTTGGTGATGGGTATTGGTGGTTTTGTGCAATAGCTGATAGAAGGATAGGGTTCCCAATTTCACATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	528450	530791	+

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0016602 CCAAT-binding factor complex

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000976.1	PF02045.10	CBFB_NFYA	88	144	3.40E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.283
SRR1783600	control	18.838
SRR1783602	moderate drought stress	26.556
SRR1811619	moderate drought stress	26.314

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.505
DRR006520	Root Summer glycyrrhizin high producing strain	18.818
DRR006521	Root Winter glycyrrhizin high producing strain	27.649
DRR006522	Root Winter glycyrrhizin high producing strain	29.131
DRR006523	Root Summer glycyrrhizin low producing strain	26.039
DRR006524	Root Summer glycyrrhizin low producing strain	25.981
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.957
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.706

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.687
SRR2868004	Drought Stress (root)	13.605
SRR2967015	Control (root)	11.272

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.511
SRR9715740	Leaf	38.724
SRR9715741	Leaf	26.882
SRR9715739	Root	4.673
SRR9715742	Root	8.676
SRR9715743	Root	7.701

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.523
SRR8749028	MeJA induced 9h	14.048
SRR8749029	MeJA induced 9h	19.629
SRR8749030	Uninduced	13.940
SRR8749031	Uninduced	9.517
SRR8749032	Uninduced	9.192

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.584
SRR8400027	Control - Root	14.894