Gene detail

Gene detail information of Glyur000010s00000973

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21160.4	3.00E-149	Calcium-dependent ARF-type GTPase activating protein family
NR	AET04392.2	0	ADP-ribosylation factor GTPase-activating protein AGD10 [Medicago truncatula]
Swissprot	tr\|Q9FVJ3\|AGD12_ARATH	0	ADP-ribosylation factor GTPase-activating protein AGD12
trEMBL	tr\|G7L835\|G7L835_MEDTR	0	ADP-ribosylation factor GTPase-activating protein AGD10 {ECO:0000313\|EMBL:AET04392.2}

Sequence

Transcript Sequence

>Glyur000010s00000973.1
TTTCTTTGAGAAGTTGAATGATTGGCAGGTGTCTTACAGGTAAAAGAAGATTGAAGGATTTATTGATTCAAAAAGATAATCGTTTTTGTGCTGATTGTGGTGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGGGTTTTTGTATGCTTAAAATGTTGTGGTGTGCACAGAAGTCTTGGTACTCATATATCAAGGGTTTTGTCTGTGACATTGGATGAATGGTCAAATGATGAAATAGATGGAATGATGGAGGTTGGTGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTATATTCCAGAAGGATATACAAAACCTGGACCAGATGCCAGTCATGAGCAGCGTGCAAAATTCATCCGGTCAAAGTATGAGCATCAAGAATTTTTGAAACCTAGTTTGCGCATCGTATCAGGAAAAAGCGTATCAGGAAAAAGTGATCGTAAATCAAGTTTTTCCAAAAGGATTATGGATAGTTTTCGAAGTACTAGTGGTTCAAAGAATATGGAAGGAATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAGATTTAGCTATCAGAGATATGATGACAAGCGATCCGTATGTCGTCTTGAAGCTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGACTATTGGATTTGAAGGTATTTGATCATGACTATTTTTCAGCTGATGATATAATGGGAGAAGCAGAGATTGATCTTCAGCCCCTGATAACATCTGCAATGGCATTTGGAGATGCTGGAATGTTTGATGATATGCAGATTGGAAAATGGCTGAAATCCAATGACAACGCACTTATAGCTGATAGCATAGTCAATATCATTGATGGTAAGGTTAAACAAGAGATGACAATCAAGCTCCAGAACGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATACCTCTTGATCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	518671	520935	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005096 GTPase activator activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000973.1	PF01412.13	ArfGap	10	125	3.50E-38
Glyur000010s00000973.1	PF00168.25	C2	173	251	1.80E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.114
SRR1783600	control	0.106
SRR1783602	moderate drought stress	0.022
SRR1811619	moderate drought stress	0.038

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.018
DRR006520	Root Summer glycyrrhizin high producing strain	0.900
DRR006521	Root Winter glycyrrhizin high producing strain	1.964
DRR006522	Root Winter glycyrrhizin high producing strain	1.657
DRR006523	Root Summer glycyrrhizin low producing strain	0.663
DRR006524	Root Summer glycyrrhizin low producing strain	0.665
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.724
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.806

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.911
SRR2868004	Drought Stress (root)	1.476
SRR2967015	Control (root)	1.399

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.486
SRR9715740	Leaf	17.801
SRR9715741	Leaf	6.642
SRR9715739	Root	0.000
SRR9715742	Root	0.062
SRR9715743	Root	0.339

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.259
SRR8749028	MeJA induced 9h	5.071
SRR8749029	MeJA induced 9h	7.107
SRR8749030	Uninduced	14.842
SRR8749031	Uninduced	29.076
SRR8749032	Uninduced	17.823

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.122
SRR8400027	Control - Root	0.100