Gene detail information of Glyur000010s00000967 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G20050.1 | 0 | T-complex protein 1 alpha subunit |
| NR | XP_003524991.1 | 0 | PREDICTED: T-complex protein 1 subunit alpha-like [Glycine max] |
| COG | YP_008431873.1 | 2.00E-125 | thermosome subunit [Thermofilum sp. 1910b] |
| Swissprot | tr|P28769|TCPA_ARATH | 0 | T-complex protein 1 subunit alpha {ECO:0000303|PubMed:11599560} |
| trEMBL | tr|I1K467|I1K467_SOYBN | 0 | T-complex protein 1 subunit alpha {ECO:0000256|RuleBase:RU004191} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 485059 | 494234 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000967.1 | PF00118.19 | Cpn60_TCP1 | 31 | 526 | 1.80E-135 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 51.948 |
| SRR1783600 | control | 51.797 |
| SRR1783602 | moderate drought stress | 48.228 |
| SRR1811619 | moderate drought stress | 47.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 75.158 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 74.054 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 62.243 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 60.953 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 52.749 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 52.539 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.834 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 110.045 |
| SRR2868004 | Drought Stress (root) | 65.319 |
| SRR2967015 | Control (root) | 68.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 33.697 |
| SRR9715740 | Leaf | 34.404 |
| SRR9715741 | Leaf | 30.293 |
| SRR9715739 | Root | 14.856 |
| SRR9715742 | Root | 51.165 |
| SRR9715743 | Root | 45.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 180.709 |
| SRR8749028 | MeJA induced 9h | 73.280 |
| SRR8749029 | MeJA induced 9h | 96.840 |
| SRR8749030 | Uninduced | 11.624 |
| SRR8749031 | Uninduced | 7.259 |
| SRR8749032 | Uninduced | 11.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 89.653 |
| SRR8400027 | Control - Root | 81.176 |