Gene detail information of Glyur000010s00000963 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46010.2 | 9.00E-66 | actin depolymerizing factor 1 |
| NR | AFK42408.1 | 8.82E-94 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9FVI1|ADF2_PETHY | 5.00E-84 | Actin-depolymerizing factor 2 |
| trEMBL | tr|I3SQ66|I3SQ66_LOTJA | 3.00E-94 | Uncharacterized protein {ECO:0000313|EMBL:AFK42408.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 474618 | 476175 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000963.1 | PF00241.15 | Cofilin_ADF | 40 | 166 | 1.30E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 127.140 |
| SRR1783600 | control | 128.500 |
| SRR1783602 | moderate drought stress | 87.880 |
| SRR1811619 | moderate drought stress | 86.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 168.643 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 174.521 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 123.660 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 117.689 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 148.123 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 147.996 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 61.467 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 58.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 184.720 |
| SRR2868004 | Drought Stress (root) | 190.105 |
| SRR2967015 | Control (root) | 178.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 107.170 |
| SRR9715740 | Leaf | 109.666 |
| SRR9715741 | Leaf | 102.700 |
| SRR9715739 | Root | 119.786 |
| SRR9715742 | Root | 129.897 |
| SRR9715743 | Root | 138.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 73.522 |
| SRR8749028 | MeJA induced 9h | 37.629 |
| SRR8749029 | MeJA induced 9h | 50.830 |
| SRR8749030 | Uninduced | 27.117 |
| SRR8749031 | Uninduced | 16.605 |
| SRR8749032 | Uninduced | 24.955 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 198.365 |
| SRR8400027 | Control - Root | 212.787 |