Gene detail

Gene detail information of Glyur000010s00000958

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04420.1	9.00E-63	NAD(P)-linked oxidoreductase superfamily protein
NR	XP_004504232.1	0	PREDICTED: protein tas-like isoform X2 [Cicer arietinum]
COG	YP_007079659.1	3.00E-104	putative oxidoreductase, aryl-alcohol dehydrogenase like protein [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q40648\|KCAB_ORYSJ	6.00E-28	Probable voltage-gated potassium channel subunit beta
trEMBL	tr\|I1K464\|I1K464_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G29830.1}

Sequence

Transcript Sequence

>Glyur000010s00000958.1
ATGCCGCCGGTGTTGAGCCACTTCGTCATCGTCATTGACAAGATTCCAGTTGTTGAAGGAGGTGATGTGATGTCAGCAATTCCTGTCTTCAACCTTGCTCCCAATCTCACTGTTTCAAAGCTCTGCTTAGGAACGATGACTTTTGGGGAGCAGAACACGTTGCCTCAGTCTTTTCGCCTTCTCGATGAGGCCTTCCATGCTGGAATCAACTTCTTTGACTCCGCTGAAATGTATCCAGTGCCTCAGCGTGCTGAGACTTGTGGGAGGAGTGAGGAGTATCTTGGCCGTTGGATCAGACTCAGAAATATCCCCAGGGACCGTCTTGTCATTGCAACCAAGGTTGCTGGACCATCTGGGCAGATGACTTGGATTAGAGGTGGTCCAAAATGTTTAGATGCCAGCAANATCACTGAAGCTATAGATAATAGTTTGTTGCGGATGCAATTGGATTATATTGATCTCTATCAAATTCATTGGCCTGATCGCTATGTTCCAATGTTTGGAGAAACCGAGTATGACCCAGTCCGACAATACTCTTCAATTAGTATAGAGGAACAACTTGAAGCTCTCAGCAGAGCTGTGAAAGCTGGGAAGATCAGATACATTGGTCTTAGTAACGAAACACCATATGGCGTGATGAAGATTAGCCTGTTGGCCTACAGTCCCCTGGCAATGGGTATACTTTCAGGGAAATATTTTCCCCCGGGTGGTGGTCCGGCAGATGCTCGGTTAAATCTTTTTAAAGGGAANTATTCAGAAGGAGAATCCAGATACAACTTGTCCAATAAAGTTATANAGGCAGCAGCTAGGGAATACCTTAATATTGCAAAAACATATGGTCTTCATCCTGTATCTCTTGCTATAGCCTTTGTTTTGCGACATCCCCTTGTTGCTAGCACCGTTTTTGGAGCTACCAAATCATGGCAGCTCAAGGAGGTTCTAAATGCAAGCAAGATCAAGCTCACATCTGAAGTAATTGAAGAAATTAACAAGATTCATTCAAGGTTTCCAAATCCATGTCCCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	447811	452926	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000958.1	PF00248.16	Aldo_ket_red	40	209	1.50E-42
Glyur000010s00000958.1	PF00248.16	Aldo_ket_red	214	333	5.40E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.237
SRR1783600	control	1.242
SRR1783602	moderate drought stress	1.473
SRR1811619	moderate drought stress	1.508

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.201
DRR006520	Root Summer glycyrrhizin high producing strain	1.370
DRR006521	Root Winter glycyrrhizin high producing strain	3.015
DRR006522	Root Winter glycyrrhizin high producing strain	3.050
DRR006523	Root Summer glycyrrhizin low producing strain	2.429
DRR006524	Root Summer glycyrrhizin low producing strain	2.683
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.228
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.273

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.707
SRR2868004	Drought Stress (root)	2.276
SRR2967015	Control (root)	3.186

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.697
SRR9715740	Leaf	4.475
SRR9715741	Leaf	1.768
SRR9715739	Root	1.175
SRR9715742	Root	1.522
SRR9715743	Root	0.953

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.962
SRR8749028	MeJA induced 9h	1.772
SRR8749029	MeJA induced 9h	1.872
SRR8749030	Uninduced	0.678
SRR8749031	Uninduced	0.526
SRR8749032	Uninduced	1.196

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.226
SRR8400027	Control - Root	7.299