Gene detail

Gene detail information of Glyur000010s00000956

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46390.2	1.00E-145	Peptidase S41 family protein
NR	XP_003629901.1	0	Carboxyl-terminal-processing protease [Medicago truncatula]
COG	YP_007145832.1	2.00E-74	C-terminal processing peptidase-2 [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|F4KHG6\|CTPA1_ARATH	0	Carboxyl-terminal-processing peptidase 1, chloroplastic (Precursor)
trEMBL	tr\|G7L820\|G7L820_MEDTR	0	Carboxy-terminal processing peptidase-like protein {ECO:0000313\|EMBL:AET04377.1}

Sequence

Transcript Sequence

>Glyur000010s00000956.1
ATGGGAGGCTGTTATCGAAAAGCTAAGGATGAGAATGACATAACATTACTACCAAGTGAAGTAGCCACGTAACAATATTGTTTCCAGTTCAGTTGATAACTTGATTGATTGATACGAGGTTAAATTCAACTGTTAAAGAGCAAAACACAATGTACAAGTGTGTGTGAACACTGAACATCATCAGCACCTCATACATCAGAATTCCAGTTGCAGAAANATGAATGTGTGGCTGAAACCCTCACCACTCTCCATCACCACCACTGCAACACTCTCAAGACCCCACCTTCCCAATCCCAAGCTCCTTTCCTCCACTGGGCTTCACAACACCCTCCTTGCTGGTGCACTCTCCTTTGGCTTCCTCTTCTCCTTGCCTTCTGCCTCTGCTCTTCAACCCCTCTCCCTTCCATCTCCTCCTCCTCCTNCTTCTTCTGCTGANACATGCCGCGATGTTGTTGAGACACAACATGTGATGGTGGTTCCAACGGCTCCCGAGGTTGTCACCAATGAAGGACTCGTTGAGGAAGCTTGGCAGATTGTCAATGATAGCTTTCTTGACAATAGTCACCACCGCTGGTCTCAGGATACCTGGCAGNTGAAGAGGGAAGATATCTTGAGCAATTCCATTCAGACAAGATCAAAGGCACACCAGATCATCAAGCGAATGCTGGCCAGTTTGGGGGATCCGTATACAAGGTTTCTTTCCCCTCAGGAGTTCTCCAAGATGGCGAGGTATGACATGACTGGTATTGGAATAAACCTTAGGGAAGTTACTGATGAAAATGGAGACAGCAGGCTGAAGGTATGGGGAACAATATTGGACGGTCCTGCTCATTCTGCTGGTGTGAGACAGGGGGATGAATTATTGGCAGTCAATAGCATGGAGGTAAAGGGAAAATCAGCATTTGAAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAGGTCAGGCGTGGAAACTGTGGGCCTGTTGAATCAATAGAGGTTCAGCGGCAATTTGTTGCTCGCACACCAGTCTTTTACCGCATGGAACAAACAGACAATGGTGCTACTCATGTTGGGTACATCCGCCTCAAAGAGTTCAATGCATTGGCCAGAAAGGATTTAGTCAGTGCAATGAAGCGACTTCAAGACATGGGTGCCTCATATTTCATATTGGATCTTAGAGACAATCTTGGTGGGCTAGTACAGGCTGGAATTGAAATTGCAAAGCTTTTCCTAAACGAAGGAGACACGGTCATCTACACTGTTGGGAGAGACCCCCAGCTCCAGCAAGCTATTCTTACAGATTCTTCACCATTGATTCAAGCCCCTGTTGTTGTTTTAGTAAATGACAAAACTGCTAGTGCAAGTGAAATAGTTGCTTCTGCACTTCATGATAATTGTAGAGCTGTTCTTGTTGGAAAACGCACATACGGCAAGGGTTTGATTCAATCTGTATTTGAGCTTCAAGATGGATCTGGTGTGGTTATCACTGTTGGGAAGTATCTTGGGATGATGTCAGCCGACATATTTCAAAATGCAGTATGCTTCAGCAAGGATGAAACAGTCCCCATGGTGTATTCCAATGCAATCTTTTCCTTCGGCTTTTGCATGATGGAAGCTGCCATGTGTATATGTCGCGAATTTCATGTTGTTAATAGATATATGCCTGAACGGTTTGCCTAGCCTTCTTGGCTACAATGGCATTTAGCATACAATTGNGTTAACTCCCAAGATTGGTGGGTAATTAAGAGAAAGGGATTGGTTTGGAACATTTGTAACTGTTCCATCCAAGATGAACTGAACAATGGATTATAAGGTGAAGAAGAAATGATCCCAGAAAGCATACAGGAGTTTGTGTCCAAGAAGCGTTTTAATGCTTACTAACATTGGAAACTTTGTTTTACATGTTTATGTACGCGCGTTTTGATATACTATGACCCTCTTCTTGCAAGTTTTCCATTTATTTATTTTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	441861	447189	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0005515 protein binding

GO:0008236 serine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000956.1	PF13180.1	PDZ_2	176	250	1.20E-08
Glyur000010s00000956.1	PF03572.13	Peptidase_S41	284	435	7.00E-41
Glyur000010s00000956.2	PF13180.1	PDZ_2	174	248	9.40E-09
Glyur000010s00000956.2	PF03572.13	Peptidase_S41	282	408	4.50E-33
Glyur000010s00000956.3	PF13180.1	PDZ_2	176	250	9.50E-09
Glyur000010s00000956.3	PF03572.13	Peptidase_S41	284	410	4.50E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.275
SRR1783600	control	3.089
SRR1783602	moderate drought stress	3.487
SRR1811619	moderate drought stress	3.565

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.067
DRR006520	Root Summer glycyrrhizin high producing strain	3.985
DRR006521	Root Winter glycyrrhizin high producing strain	1.042
DRR006522	Root Winter glycyrrhizin high producing strain	0.981
DRR006523	Root Summer glycyrrhizin low producing strain	9.260
DRR006524	Root Summer glycyrrhizin low producing strain	8.709
DRR006525	Leaf Summer glycyrrhizin high producing strain	41.927
DRR006526	Leaf Summer glycyrrhizin high producing strain	41.700

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.654
SRR2868004	Drought Stress (root)	2.755
SRR2967015	Control (root)	4.320

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.682
SRR9715740	Leaf	35.368
SRR9715741	Leaf	19.833
SRR9715739	Root	1.973
SRR9715742	Root	1.637
SRR9715743	Root	1.656

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.420
SRR8749028	MeJA induced 9h	0.851
SRR8749029	MeJA induced 9h	0.483
SRR8749030	Uninduced	0.359
SRR8749031	Uninduced	0.181
SRR8749032	Uninduced	0.069

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.143
SRR8400027	Control - Root	4.404