Gene detail information of Glyur000010s00000955 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29380.1 | 2.00E-32 | Carbohydrate-binding X8 domain superfamily protein |
| NR | XP_003532781.1 | 2.38E-108 | PREDICTED: glucan endo-1,3-beta-glucosidase-like protein 2-like [Glycine max] |
| Swissprot | tr|O65399|E131_ARATH | 1.00E-23 | Glucan endo-1,3-beta-glucosidase 1 (Precursor) |
| trEMBL | tr|I1KSL0|I1KSL0_SOYBN | 9.00E-109 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G12910.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 435143 | 438793 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000955.1 | PF07983.8 | X8 | 126 | 197 | 1.00E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.193 |
| SRR1783600 | control | 2.167 |
| SRR1783602 | moderate drought stress | 1.563 |
| SRR1811619 | moderate drought stress | 1.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.752 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.399 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.460 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.488 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.362 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.403 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.425 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.873 |
| SRR2868004 | Drought Stress (root) | 3.505 |
| SRR2967015 | Control (root) | 3.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.028 |
| SRR9715740 | Leaf | 0.441 |
| SRR9715741 | Leaf | 0.430 |
| SRR9715739 | Root | 0.184 |
| SRR9715742 | Root | 0.574 |
| SRR9715743 | Root | 0.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.592 |
| SRR8749028 | MeJA induced 9h | 0.289 |
| SRR8749029 | MeJA induced 9h | 0.455 |
| SRR8749030 | Uninduced | 0.822 |
| SRR8749031 | Uninduced | 0.737 |
| SRR8749032 | Uninduced | 0.435 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.761 |
| SRR8400027 | Control - Root | 3.940 |