Gene detail

Gene detail information of Glyur000010s00000954

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G29390.2	7.00E-48	cold regulated 314 thylakoid membrane 2
NR	XP_004504237.1	9.98E-93	PREDICTED: cold-regulated 413 inner membrane protein 2, chloroplastic-like isoform X2 [Cicer arietinum]
Swissprot	tr\|F4I1G5\|CRIM2_ARATH	2.00E-59	Cold-regulated 413 inner membrane protein 2, chloroplastic (Precursor)
trEMBL	tr\|I3SSQ8\|I3SSQ8_LOTJA	1.00E-90	Uncharacterized protein {ECO:0000313\|EMBL:AFK43300.1}

Sequence

Transcript Sequence

>Glyur000010s00000954.1
CGACAAGATTTTTTTTAATTTTTTGGTTTGGATACGTATCACCCCATACCTTTTTATTTTTCCATGAAAGTTATTTTGTTCGTTGAATAGGAAAAGACTCATTCTTTTTACGGCTCATATCGCTCGCCTAGTAGTTATAAAAAAGAAATAATATCTGTAATTTGTAATACTACTTAAAAAATAACACGTGGACATTTACTCATTGAAGACTCTGTACGCCCGCTAATTTTTTTTAGTAGGAAGAAACTGGAATTCTTGTGTGAGAAATGCGGGTGCTACGACAAAGCAGCAGTCAGCAGAGTCAAGTATATTTGTTTGCGTTTGTGCCTAACAGANTTGAAGGAAGAGCATAGGCGTCGAAACGAAAAACAGAAAGAAGAGAAAGAGAAGAAAGGAAGNAAAAAAAATGATATCAGCTTGTGTGTCTTCAACTGCAACTGCACGAACCACTTTCTCTCTCCTCAACTGCAAAGATCCACCATCTTCGCTCTCTCTCCATCGCTCATCACCGTCATCGCTCTCCTTCTCCCGCTCCTTCAATCCCCTTGGCTTCAGATCTGTGATCCGCCATGACGGAATCGGAAGCGTCGTGAAGTCGAAGACCAGCAACAGAAGCACAGGGTTTCGCGTGCTTTGCTATGCTCGTCCTCTCACTCCTCCCAATTTGCAGTGGATCTCTGCCGTTTCTTCTCTGGTTTTAATACTGGCAAGGGGCACCGCGGTACCCAAATCGTTTATTGTTCCATTATTTGCTTTGCAAGCACCTGCAGGTGTCGTTGCCTGGATACAGTATTGTTATTTTAACCCTTTTATTGGTCTAAATATTTTACACAATTGGACATACAGAGGTCGATATGGTGTGTGGTCAGCATTCTTGGCACTTCTGGTTCGTCTTTTCTTTTATATTCCTGGTGAACTTGAGTTGCCATTTATAGCATTACTCTTGGTGATGGTAGCTCCTCATGAGGCTATGCGATTGAGGAACACAAAAGAAGGTGCTTTAATTTCATTGTTGATTTCGGTGTATTTGGCTTTCCAACATTTCTCAAGAACAGGCGTGCGGAAATCACTTGACCAAGGTTCAATTGTTGCCACTTTAGCTGTCATTTGTGTCACTGTTGCATCTTTGTTGCTTCTGATCTGAGTTGGCTTTGAAATGATGCACACTAATATGTTGTAAATAAGAATAATACCTGTTGGAATGATGATACAATTCGGGGTACTAGAGGATATGTATTATGTTAGTCGCTCTATTGTGTACCTTTTACTTATTTAAATAATGAAGTCAGAATCGGTATTCGTGATAGAATTTTGTATTTAGTACATGATATTCTGTATATATTATAGTGACTGAAGCTAGCTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	431230	434232	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000954.1	PF05562.6	WCOR413	68	128	3.20E-09
Glyur000010s00000954.1	PF05562.6	WCOR413	146	238	4.90E-27
Glyur000010s00000954.2	PF05562.6	WCOR413	68	219	5.40E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	314.160
SRR1783600	control	315.315
SRR1783602	moderate drought stress	195.272
SRR1811619	moderate drought stress	195.267

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	89.759
DRR006520	Root Summer glycyrrhizin high producing strain	88.210
DRR006521	Root Winter glycyrrhizin high producing strain	91.271
DRR006522	Root Winter glycyrrhizin high producing strain	88.843
DRR006523	Root Summer glycyrrhizin low producing strain	71.851
DRR006524	Root Summer glycyrrhizin low producing strain	71.183
DRR006525	Leaf Summer glycyrrhizin high producing strain	147.469
DRR006526	Leaf Summer glycyrrhizin high producing strain	144.195

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	67.731
SRR2868004	Drought Stress (root)	52.066
SRR2967015	Control (root)	63.556

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	72.056
SRR9715740	Leaf	77.177
SRR9715741	Leaf	66.018
SRR9715739	Root	65.324
SRR9715742	Root	95.061
SRR9715743	Root	85.050

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.878
SRR8749028	MeJA induced 9h	36.983
SRR8749029	MeJA induced 9h	47.977
SRR8749030	Uninduced	30.304
SRR8749031	Uninduced	37.588
SRR8749032	Uninduced	31.479

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	295.591
SRR8400027	Control - Root	386.549