Gene detail

Gene detail information of Glyur000010s00000949

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46420.1	1.00E-149	16S rRNA processing protein RimM family
NR	XP_004504243.1	0	PREDICTED: uncharacterized protein LOC101509004 [Cicer arietinum]
COG	YP_007066042.1	2.00E-40	16S rRNA processing protein RimM [Calothrix sp. PCC 7507]
Swissprot	tr\|O64765\|UAP2_ARATH	8.00E-08	UDP-N-acetylglucosamine diphosphorylase 2
trEMBL	tr\|G7L811\|G7L811_MEDTR	0	16S rRNA processing protein RimM {ECO:0000313\|EMBL:AET04368.2}

Sequence

Transcript Sequence

>Glyur000010s00000949.1
CTATTCTCTCAGCCATGATATGATATCTATTTGGTGCTGGGTCAGGACTCCGGAGTTCAGTTCAGGGCGGGATATTTATCTTTATCATTTACGTGTTTGTTTTATGGTTGCCTCGCCTCGCCTCGCCTGGTTGGCAAATGCACCCAACTGCCTAAGACTAACTGAGCAAAGGGAAGCGGTAGAAGATGCAGCTGCTGATTCGGGCACTGCCCCCAACCTCTCAACGCCCATTCCAGCCTCTTACTCCTCCACTTGGAATCAATTACAATTCCCCTTTCAATTTCAAACACTTTTTTCTAACTCCAGCCAAACACCTCCCTATTCCTCTGCACTCNCGCACCCAAACCACCACTGTTGCTACGGCTACAGCTACCGACGATGTCGTTGTCGACAGCGACGAGGTTGTTGCTACTCCCAACGGCTACGACGAATCGGGATTCGTGGACGTTGGTTATGTGTCCGGCGTTCANGGTGTTCAAGGCGAGATTCGTGTGAAGCCGATAACTGATTTTCCTCAACTGCGGTTTTCCACTCCTGGGAGGAGATGGTTGAAGCAGAAGGTTATGGGCGGAGAAACCGTTCGACAGGTTGAGCTCGAGGAAGGTAGGGAGCACGCTGGCCAGAATTCCTGGATACTCAGATTCAGAGGAATCAACACNGTGGAGCAGGCTAAGTTGCTTGTTGGCTCTACCTTGCTTGTCATGGAAGAAGACAGGCCTGAACTAGAGGAAGGTGAATTTTACACGCGTGATCTCATTGGGATGAAAGTTGTTATGAAGGAAAATGGAAAACTTTTGGGAACTGTTAGCAATGTTTTCAATAGTGGAGCAAATGATCTACTACAAATTTCACTTGATTCATCTTTCGATATTCTTGATAAAAGTGGCAAGCCAAGGACAGAACAAATAGAAGCATCTGGTCAGCTTGTTTTGGTACCTTTTGTTGAAACAATTGTTCCAGATGTTGATATGAAAAGAAGAGAAATGCATATTACACCGCCCAAGGGACTCCTAGAATTAAACTTACGATTTGATGAAAGGTCCAAAAAAGAAAGGCGCCAACTTGAATGGAAAGAAAGGAAAAAGTTTCAAAAGCGTCTTATAGCAGCAAAAANGAAACTCCATGAAATGGAGCAACAACATGCATTTCATGGATTTCGATATGGAGAGAAAGAACAATGGAGCTTGCTTAGTGATCAGATTGTTGGTGTAAACTCCAAATTGCTTCAGGAGGCTTTACAGAGTCTTGAACAACCAGCCAAGAGATGGAATGGAGCTGAGTTGGTCAGTGCCGTAGAAGCAAAGCTTATAAGTACTATGCAAATATCAGAGGAATCTTTCTTAACTGGAAGTGAAGAGAAGTTGGTTGGAGATATCAATATACAAGAGAAGGGACTTGGGCTAATTTCTGAGGGCAAAATGGCTATTGTCTTGCTCTTGAATGAAAAAGAGAGTCAAGGATGCATTCGTGTCCCTGACATTGTTGAAAATGAAACAATCGACACTTCAACAATAAATGTGCTTCAAAAGTTGCTGTGTGACCATGAACAGTTTGTAAAGGTCAAGGATCGTGTGTCTGTGCCTTTAATTTTGGTTTCCTCAGCCCAACAAATTCAGTCTTTAAGAAATCTGTTTACAAGCAACAATCATTTTGCATTTGACTCTGAAAAGGTATGGTTTTTGGAGGAAGAGAAGCTGCCAGTTGTTAGCAGTTTGCCAGAAGGACGGAACAAATATAAGATTTTAATGAAGTCACCCTGGGAAATACTCCAATCTCCTGTTGGATCTGGAGGATTTGTTAGCTTGTTTTCAAAACATAGCNTTGTGGATAATCTTATTGACATGGGTGTTGAGTACGTTGAGTTATGCTGCCCAAGTGAAAGAACTGCTGGTGGAAACTCACTACTACTTGGTTTGGTTAATTCACGGGAAGCCAATATTGGGATACAAATTTCACCTACAATAGCTGATCCAGATGAAAATTTTGACATGATATTCTCAATGGACTTTGTAAAGAAGTTAACGAAGCAGAGCAACAAACTTCAATTTAATGCAATCCCAAAGGCAAATTCCTTTGTTGAGAATGTTGACAAAGAATGGGTTACCGTCACCTCGTCCACCCCAAACTCATATGANCTCTCTTGTAGCATATATAGTTCCATAAACGCATGTCCTTTGGATAAGGTTTGTATAGTGGAGGTTAGAGAATAATACGATAAATTATATTGATTTAGTGATGAGATGAGATCAGAATTACTCAAGGTAGAATAGGGAATGAAAAAACAAAAGCCACCCCACCCCACACACAAAAAAGGGCATATGTATGGTGCGTGGCATTCCTTTGAATCCACGGAATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	401104	407872	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006364 rRNA processing

cellular_component
GO:0005840 ribosome

molecular_function
GO:0043022 ribosome binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000949.1	PF01782.13	RimM	88	175	8.50E-18
Glyur000010s00000949.1	PF05239.11	PRC	182	276	1.40E-09
Glyur000010s00000949.2	PF01782.13	RimM	88	145	3.40E-08
Glyur000010s00000949.2	PF05239.11	PRC	155	249	4.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.258
SRR1783600	control	3.562
SRR1783602	moderate drought stress	5.209
SRR1811619	moderate drought stress	5.299

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.076
DRR006520	Root Summer glycyrrhizin high producing strain	5.879
DRR006521	Root Winter glycyrrhizin high producing strain	10.981
DRR006522	Root Winter glycyrrhizin high producing strain	10.500
DRR006523	Root Summer glycyrrhizin low producing strain	10.736
DRR006524	Root Summer glycyrrhizin low producing strain	10.448
DRR006525	Leaf Summer glycyrrhizin high producing strain	41.547
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.927

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.021
SRR2868004	Drought Stress (root)	8.333
SRR2967015	Control (root)	9.926

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.236
SRR9715740	Leaf	44.352
SRR9715741	Leaf	25.813
SRR9715739	Root	0.896
SRR9715742	Root	2.716
SRR9715743	Root	2.168

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.532
SRR8749028	MeJA induced 9h	7.501
SRR8749029	MeJA induced 9h	5.231
SRR8749030	Uninduced	5.815
SRR8749031	Uninduced	2.949
SRR8749032	Uninduced	2.271

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.688
SRR8400027	Control - Root	6.072