Gene detail information of Glyur000010s00000947 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G46530.1 | 6.00E-60 | AWPM-19-like family protein |
| NR | XP_003531288.1 | 2.93E-101 | PREDICTED: uncharacterized protein LOC100781792 isoform X1 [Glycine max] |
| trEMBL | tr|I1KSK1|I1KSK1_SOYBN | 1.00E-101 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G12830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 395776 | 397009 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000947.1 | PF05512.6 | AWPM-19 | 15 | 155 | 2.90E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.787 |
| SRR1783600 | control | 0.756 |
| SRR1783602 | moderate drought stress | 1.078 |
| SRR1811619 | moderate drought stress | 1.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.786 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.848 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.496 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.369 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.902 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.885 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.952 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.082 |
| SRR2868004 | Drought Stress (root) | 3.141 |
| SRR2967015 | Control (root) | 2.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.595 |
| SRR9715740 | Leaf | 0.072 |
| SRR9715741 | Leaf | 0.260 |
| SRR9715739 | Root | 0.444 |
| SRR9715742 | Root | 0.760 |
| SRR9715743 | Root | 0.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.617 |
| SRR8749028 | MeJA induced 9h | 0.592 |
| SRR8749029 | MeJA induced 9h | 0.662 |
| SRR8749030 | Uninduced | 1.166 |
| SRR8749031 | Uninduced | 1.381 |
| SRR8749032 | Uninduced | 3.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.553 |
| SRR8400027 | Control - Root | 1.794 |