Gene detail information of Glyur000010s00000945 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48540.1 | 9.00E-70 | Cytidine/deoxycytidylate deaminase family protein |
| NR | KHN34422.1 | 6.21E-94 | Deoxycytidylate deaminase [Glycine soja] |
| COG | YP_002429378.1 | 4.00E-45 | dCMP deaminase [Desulfatibacillum alkenivorans AK-01] |
| trEMBL | tr|I1K0B7|I1K0B7_SOYBN | 2.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G03380.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 375071 | 376840 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01493 | comEB | EC:3.5.4.12 | Pyrimidine metabolism | map00240 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000945.1 | PF00383.17 | dCMP_cyt_deam_1 | 1 | 94 | 3.70E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.088 |
| SRR1783600 | control | 0.113 |
| SRR1783602 | moderate drought stress | 0.258 |
| SRR1811619 | moderate drought stress | 0.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.352 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.302 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.272 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.424 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.633 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.263 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.606 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.249 |
| SRR2868004 | Drought Stress (root) | 2.169 |
| SRR2967015 | Control (root) | 2.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.816 |
| SRR9715740 | Leaf | 0.154 |
| SRR9715741 | Leaf | 0.316 |
| SRR9715739 | Root | 0.245 |
| SRR9715742 | Root | 0.193 |
| SRR9715743 | Root | 0.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.715 |
| SRR8749028 | MeJA induced 9h | 1.263 |
| SRR8749029 | MeJA induced 9h | 1.779 |
| SRR8749030 | Uninduced | 0.672 |
| SRR8749031 | Uninduced | 0.077 |
| SRR8749032 | Uninduced | 0.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.405 |
| SRR8400027 | Control - Root | 3.157 |