Gene detail information of Glyur000010s00000933 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48530.1 | 7.00E-143 | SNF1-related protein kinase regulatory subunit gamma 1 |
| NR | XP_007155544.1 | 0 | hypothetical protein PHAVU_003G210600g [Phaseolus vulgaris] |
| COG | YP_002730020.1 | 1.00E-10 | inosine-5'-monophosphate dehydrogenase [Persephonella marina EX-H1] |
| Swissprot | tr|Q8LBB2|KING1_ARATH | 0 | SNF1-related protein kinase regulatory subunit gamma-1 |
| trEMBL | tr|V7CDU3|V7CDU3_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW27538.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 314241 | 319056 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000933.1 | PF00571.23 | CBS | 62 | 113 | 9.70E-07 |
| Glyur000010s00000933.1 | PF00571.23 | CBS | 262 | 296 | 1.90E-05 |
| Glyur000010s00000933.1 | PF00571.23 | CBS | 323 | 373 | 9.50E-14 |
| Glyur000010s00000933.1 | PF00571.23 | CBS | 415 | 465 | 9.50E-14 |
| Glyur000010s00000933.2 | PF00571.23 | CBS | 62 | 113 | 7.20E-07 |
| Glyur000010s00000933.2 | PF00571.23 | CBS | 262 | 296 | 1.40E-05 |
| Glyur000010s00000933.2 | PF00571.23 | CBS | 323 | 373 | 7.00E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.902 |
| SRR1783600 | control | 26.835 |
| SRR1783602 | moderate drought stress | 74.301 |
| SRR1811619 | moderate drought stress | 74.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 39.846 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 39.549 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 266.315 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 260.592 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 51.856 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 52.545 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.491 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 71.765 |
| SRR2868004 | Drought Stress (root) | 224.294 |
| SRR2967015 | Control (root) | 376.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.530 |
| SRR9715740 | Leaf | 15.077 |
| SRR9715741 | Leaf | 34.253 |
| SRR9715739 | Root | 41.166 |
| SRR9715742 | Root | 60.563 |
| SRR9715743 | Root | 56.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 212.814 |
| SRR8749028 | MeJA induced 9h | 725.214 |
| SRR8749029 | MeJA induced 9h | 460.224 |
| SRR8749030 | Uninduced | 145.068 |
| SRR8749031 | Uninduced | 523.990 |
| SRR8749032 | Uninduced | 441.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 82.229 |
| SRR8400027 | Control - Root | 62.490 |