Gene detail information of Glyur000010s00000931.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14170.1 | 2.00E-162 | SWIB/MDM2 domain superfamily protein |
| NR | XP_004515819.1 | 0 | PREDICTED: SWI/SNF complex component SNF12 homolog [Cicer arietinum] |
| Swissprot | tr|Q9FMT4|SNF12_ARATH | 0 | SWI/SNF complex component SNF12 homolog |
| trEMBL | tr|G7JLF1|G7JLF1_MEDTR | 0 | Chromatin remodeling complex subunit {ECO:0000313|EMBL:AES91040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 298555 | 304410 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SWI/SNF-BAF60b |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000931.1 | PF02201.13 | SWIB | 352 | 424 | 5.70E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.616 |
| SRR1783600 | control | 13.541 |
| SRR1783602 | moderate drought stress | 12.968 |
| SRR1811619 | moderate drought stress | 12.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.541 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.534 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.016 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.903 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.512 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.501 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.069 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.326 |
| SRR2868004 | Drought Stress (root) | 10.462 |
| SRR2967015 | Control (root) | 10.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.246 |
| SRR9715740 | Leaf | 7.786 |
| SRR9715741 | Leaf | 6.631 |
| SRR9715739 | Root | 6.295 |
| SRR9715742 | Root | 11.252 |
| SRR9715743 | Root | 10.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.664 |
| SRR8749028 | MeJA induced 9h | 5.565 |
| SRR8749029 | MeJA induced 9h | 2.960 |
| SRR8749030 | Uninduced | 2.283 |
| SRR8749031 | Uninduced | 1.184 |
| SRR8749032 | Uninduced | 0.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.759 |
| SRR8400027 | Control - Root | 9.609 |