Gene detail information of Glyur000010s00000927.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40870.1 | 0 | uridine kinase/uracil phosphoribosyltransferase 1 |
| NR | XP_003550868.1 | 0 | PREDICTED: uridine kinase-like protein 1, chloroplastic-like [Glycine max] |
| COG | NP_242141.1 | 8.00E-56 | uridine kinase [Bacillus halodurans C-125] |
| Swissprot | tr|Q9LK34|UKL2_ARATH | 0 | Putative uracil phosphoribosyltransferase (Precursor) |
| trEMBL | tr|I1MUP0|I1MUP0_SOYBN | 0 | Uridine kinase {ECO:0000256|RuleBase:RU003825} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 271402 | 276903 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00876 | udk, UCK | EC:2.7.1.48 | Pyrimidine metabolism | map00240 |
| Drug metabolism - other enzymes | map00983 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000927.1 | PF00485.13 | PRK | 42 | 221 | 2.30E-40 |
| Glyur000010s00000927.1 | PF14681.1 | UPRTase | 251 | 451 | 3.70E-70 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.700 |
| SRR1783600 | control | 4.728 |
| SRR1783602 | moderate drought stress | 4.490 |
| SRR1811619 | moderate drought stress | 4.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.045 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.877 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.469 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.066 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.137 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.562 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.366 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.967 |
| SRR2868004 | Drought Stress (root) | 4.987 |
| SRR2967015 | Control (root) | 5.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.465 |
| SRR9715740 | Leaf | 1.554 |
| SRR9715741 | Leaf | 1.791 |
| SRR9715739 | Root | 0.835 |
| SRR9715742 | Root | 5.946 |
| SRR9715743 | Root | 4.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.176 |
| SRR8749028 | MeJA induced 9h | 7.322 |
| SRR8749029 | MeJA induced 9h | 6.196 |
| SRR8749030 | Uninduced | 4.931 |
| SRR8749031 | Uninduced | 10.281 |
| SRR8749032 | Uninduced | 6.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.354 |
| SRR8400027 | Control - Root | 9.851 |