Gene detail information of Glyur000010s00000926 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42380.1 | 8.00E-21 | calmodulin like 37 |
| NR | XP_003549848.1 | 3.20E-78 | PREDICTED: putative calcium-binding protein CML19-like [Glycine max] |
| COG | YP_289850.1 | 7.00E-08 | calcium-binding EF-hand [Thermobifida fusca YX] |
| Swissprot | tr|Q8RYJ8|CML19_ORYSJ | 7.00E-38 | Putative calcium-binding protein CML19 |
| trEMBL | tr|I1MUN9|I1MUN9_SOYBN | 1.00E-78 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G13820.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 269515 | 269943 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000926.1 | PF13833.1 | EF-hand_8 | 22 | 71 | 1.40E-06 |
| Glyur000010s00000926.1 | PF13499.1 | EF-hand_7 | 81 | 141 | 3.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.170 |
| SRR1783600 | control | 0.171 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.670 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.521 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.520 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.291 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 61.361 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 57.333 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.665 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.646 |
| SRR2868004 | Drought Stress (root) | 28.132 |
| SRR2967015 | Control (root) | 134.383 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 127.165 |
| SRR9715740 | Leaf | 56.789 |
| SRR9715741 | Leaf | 112.249 |
| SRR9715739 | Root | 176.063 |
| SRR9715742 | Root | 188.521 |
| SRR9715743 | Root | 184.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 265.588 |
| SRR8749028 | MeJA induced 9h | 378.477 |
| SRR8749029 | MeJA induced 9h | 335.312 |
| SRR8749030 | Uninduced | 275.880 |
| SRR8749031 | Uninduced | 520.803 |
| SRR8749032 | Uninduced | 261.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.776 |
| SRR8400027 | Control - Root | 14.131 |