Gene detail information of Glyur000010s00000923 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14470.1 | 2.00E-87 | NB-ARC domain-containing disease resistance protein |
| NR | XP_003626880.1 | 0 | Cc-nbs-lrr resistance protein [Medicago truncatula] |
| COG | NP_485676.1 | 5.00E-10 | regulatory protein [Nostoc sp. PCC 7120] |
| Swissprot | tr|Q7XBQ9|RGA2_SOLBU | 1.00E-108 | Disease resistance protein RGA2 |
| trEMBL | tr|G7LED2|G7LED2_MEDTR | 0 | NB-ARC domain disease resistance protein {ECO:0000313|EMBL:AET01356.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 257661 | 259532 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000923.1 | PF00931.17 | NB-ARC | 175 | 465 | 1.10E-71 |
| Glyur000010s00000923.1 | PF12799.2 | LRR_4 | 581 | 614 | 1.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.041 |
| SRR1783600 | control | 3.056 |
| SRR1783602 | moderate drought stress | 4.662 |
| SRR1811619 | moderate drought stress | 4.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.005 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.168 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.706 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.367 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.787 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.884 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.985 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.658 |
| SRR2868004 | Drought Stress (root) | 12.254 |
| SRR2967015 | Control (root) | 14.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.306 |
| SRR9715740 | Leaf | 7.547 |
| SRR9715741 | Leaf | 14.911 |
| SRR9715739 | Root | 1.953 |
| SRR9715742 | Root | 14.280 |
| SRR9715743 | Root | 12.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.363 |
| SRR8749028 | MeJA induced 9h | 34.280 |
| SRR8749029 | MeJA induced 9h | 9.147 |
| SRR8749030 | Uninduced | 5.262 |
| SRR8749031 | Uninduced | 2.837 |
| SRR8749032 | Uninduced | 2.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.638 |
| SRR8400027 | Control - Root | 14.481 |