Gene detail

Gene detail information of Glyur000010s00000919.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G49180.1	5.00E-53	Transducin/WD40 repeat-like superfamily protein
NR	XP_004515895.1	0	PREDICTED: WD repeat-containing protein 18-like [Cicer arietinum]
COG	YP_004050921.1	3.00E-18	wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672]
Swissprot	tr\|Q9M3B4\|RID3_ARATH	3.00E-60	Protein ROOT INITIATION DEFECTIVE 3
trEMBL	tr\|G7JMJ5\|G7JMJ5_MEDTR	0	WD domain, G-beta repeat protein {ECO:0000313\|EMBL:AES91055.2}

Sequence

Transcript Sequence

>Glyur000010s00000919.1
ATGGTGGAAGAAGGAGAGGCAGTGGTGGTGTGCAGTGACAAAAGCATGAAAATTGGGGTGACGATATGGGACATTGATAAGGGAGAAAAACTGCTTCACATACCAACATGTGCTTCANCACCATTCGGATTATTGTGCTTAAGAAACCGGTTCCTCGTGGCATCGCAAATAAACAAACACGGGTCTGTAGGTCAGGGATCCATTGTTGTTTGGGCCTTGAACAAGCCTCAACATCCACTTTTGAATTACACAGCAGAGGCCATTGGGCCACTTTCTTGCACAAAAGATGGCATATACCTTGTGGGAGGTGGTTTGTCTGGAAATGCTTATCTCTGGGATGTGACCAGTGGAAAATTGCTGAAGACTTGGACTGCTCATTATAAATCTCTAAAACACATGTTATTTTCAGATGACAATTCTCTTCTAATTTCTGGTTCAGGTGATGGTATGATATGTGTTTGGTCCATGATTAGTTTGTTAGATGTGGAAGAAAGGGGAAGCTCGCCTCCTTTATTACGTTGTTTGTCAGGGCATATGTCCTCTATAACAGGTCTTTTAACTACACCATGCAGTAACTTCTCAGTTTTAATATCAAGCTCCCTTGATGGCACATGCAAGTTTTGGGACTTTATCAAGGGAAGGCTCATGCAAACTCAACTTTATNCTTTGGCAATAACTTCCATCGCTCTTCACCAAGGAGAAAGGCTCTTGTTTAGTGGTACAGAAAATGGAACTATATTTGTCAACAAGCTTGTTATTGTTGATTTGGAAGAAGGTCCTTCCATTATCACAGTAGGCCAACCACTTGAATTGAATGGACACAGTGGAGCCATTACTGTATTGACCTCTAGTAAGACATGCCTTTTATCTGCCTCTGAAGATGGCACAATCTGCGTTTGGGATGTCATTAGCTGTGCAATCATTCAAAGATTCAATCTTGAAAAAGGGAAAGTAACTAATTTGGTGGTAGTTCCTCGGTCATCAGTGCTCACCACATCAAATCATAGGAGAGTCTCCAATCAGTATATTGTTTCTCCACTTGAAAAGTATCCTAAGCCGATCAACTCATCATGGGGAACTACCACTCTCCTTTCATTATGTCACCCNTACAGAGAAAAACAAACTTGCATTGATTTATGCAGTAGCAGTACTCAAAGCAATTATGCCAATGGCAATGGCCACACAAATGAAAGTGGAAACAAGCACAGAGAATCGTATATGGGCAACAAAGATGGCAAAGCAGGTCATGGTGATAAACAAACAGTTGCAGTCAAAACTGTTGGACTTGATACGGCNTAGATTGTTTTGTCCAAACAGAATCAACAACTTTCAAAAAACTGGTAGAAAGAAGCCCAGAATCAAGAGTATTGCACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	220446	224779	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000919.1	PF00400.27	WD40	117	155	3.80E-06
Glyur000010s00000919.1	PF00400.27	WD40	172	209	0.00092
Glyur000010s00000919.1	PF00400.27	WD40	270	301	4.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.897
SRR1783600	control	1.793
SRR1783602	moderate drought stress	0.279
SRR1811619	moderate drought stress	0.384

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.315
DRR006520	Root Summer glycyrrhizin high producing strain	0.230
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.079
DRR006524	Root Summer glycyrrhizin low producing strain	0.051
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.413
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.642

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.362
SRR2868004	Drought Stress (root)	6.661
SRR2967015	Control (root)	4.152

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.479
SRR9715740	Leaf	4.804
SRR9715741	Leaf	2.008
SRR9715739	Root	0.298
SRR9715742	Root	0.314
SRR9715743	Root	0.344

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.230
SRR8749029	MeJA induced 9h	0.107
SRR8749030	Uninduced	0.348
SRR8749031	Uninduced	0.040
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.608
SRR8400027	Control - Root	8.253