Gene detail information of Glyur000010s00000917 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12860.1 | 0 | NOP56-like pre RNA processing ribonucleoprotein |
| NR | KHN44630.1 | 0 | Nucleolar protein 56 [Glycine soja] |
| COG | YP_003858756.1 | 9.00E-58 | rRNA biogenesis protein Nop56/Nop58 [Ignisphaera aggregans DSM 17230] |
| Swissprot | tr|Q9MAB3|NOP5B_ARATH | 4.00E-114 | Probable nucleolar protein 5-2 |
| trEMBL | tr|I1KJ56|I1KJ56_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G11560.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 204647 | 208006 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000917.1 | PF08156.8 | NOP5NT | 3 | 69 | 1.70E-19 |
| Glyur000010s00000917.1 | PF08060.8 | NOSIC | 170 | 221 | 1.30E-25 |
| Glyur000010s00000917.1 | PF01798.13 | Nop | 266 | 412 | 6.00E-61 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 132.079 |
| SRR1783600 | control | 133.793 |
| SRR1783602 | moderate drought stress | 147.857 |
| SRR1811619 | moderate drought stress | 147.855 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 149.971 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 149.243 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 171.558 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 168.016 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 146.294 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 147.392 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 50.751 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 50.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 149.096 |
| SRR2868004 | Drought Stress (root) | 108.411 |
| SRR2967015 | Control (root) | 115.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 55.437 |
| SRR9715740 | Leaf | 66.805 |
| SRR9715741 | Leaf | 57.287 |
| SRR9715739 | Root | 8.554 |
| SRR9715742 | Root | 77.672 |
| SRR9715743 | Root | 68.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 318.868 |
| SRR8749028 | MeJA induced 9h | 118.931 |
| SRR8749029 | MeJA induced 9h | 241.589 |
| SRR8749030 | Uninduced | 42.898 |
| SRR8749031 | Uninduced | 27.240 |
| SRR8749032 | Uninduced | 55.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 112.896 |
| SRR8400027 | Control - Root | 94.792 |