Gene detail

Gene detail information of Glyur000010s00000913.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G03860.2	malate synthase
NR	XP_003637218.1	Malate synthase [Medicago truncatula]
COG	YP_634565.1	malate synthase [Myxococcus xanthus DK 1622]
Swissprot	tr\|P45458\|MASY_SOYBN	Malate synthase, glyoxysomal (Fragment)
trEMBL	tr\|G7ZYR8\|G7ZYR8_MEDTR	Malate synthase {ECO:0000256\|RuleBase:RU000555}

Sequence

Transcript Sequence

>Glyur000010s00000913.1
TATCCTCCAATTCCATGTTGTGGTCATTTTCTTGTCTGCTTTGATCCTCTTACGCCCAAGAAGTCATACATTCTCTTCCAATGCCCATATTGATAAACTATGAAGCTATATATTTAATTTCCCGATTTTTANTTTATGAGAAAAACAGTGTAGAACATAACTATAAACAAAAACATATCACTGAAAATGTTTTTTTCTAAAAAAAACAAAAACAATAAGCAGCGCATTATCATAAAGTTGTACCATCCCACCCACTTGTGTTCTATATAAATTCGACCAAGCCTTTGCTATCAACTCATCGCATTCCATTTTCACTCGAGCAATAATAGACTTGTATAAGAGAGAATAATAAATTAAGGTGATGGACCTCGGAACCTATGGCTATCCTACACCACCAACAGGGAAAAAGAATATNGACTCTAATAACTATGATGTGCCAGAAGGGGTTGAGGTTCGGGGAAGATACGATGAAGAGTATGCAAAAATTCTCACCAAAGATGCATTGAAATTCGTTGCTGACCTGCAACGTGAGTTCAGAAACCACATCAAGTACGCACTGGAGTGCAGAAGAGAAGCAAAGAGGAGGTACAGTGAAGGGGCTCTACCTGGGTTTGATCCTGCCACAAGGTACATAAGAGAAGGGGATTGGGTGTGTGCACCTGTTCCACCCTCTGTTTCTGATAGGAGAGTGGAGATCACTGGTCCAGTGGAGAGAAAGATGATCATCAATGCTCTCAACTCTGGAGCTAAAGTCTTCATGGCTGATTTTGAAGATGCACTGTCTCCTAGCTGGGAGAATCTTATGAGAGGGCAAGTGAACTTGAAGGATGCTGTGGCTGGTACCATAACCTTCCATGACAAAGTCAGAAACAGGGTTTACAAGCTGAATGATCAGACCGCGAAGCTCTTTGTGCGACCAAGAGGATGGCACTTACCTGAGGCTCATATTTTGATTGATGGTGAACCCGCAACTGGTTGCCTTGTTGATTTTGGCCTTTACTTTTACCACAATCACTCAACATTCCGGCATACTCAAGGTGATGGGTTCGGCCCTTTCTTCTATCTTCCCAAAATGGAGCACTCAAGGGAAGCAAAGATATGGAACGAGGTGTTTGAGAGGGCAGAGAAAATGGGAGGGATTGAAAGGGGAAGCATTAGGGCAACTGTTCTGATTGAAACACTTCCTGCAGTGTTTCAAATGGATGAAATTCTGTATGAGCTAAGGGACCACTCTGTGGGTCTCAACTGTGGGCGCTGGGATTACATTTTCAGTTATGTTAAGACCTTCCAGGCTCACCCAGATCGCTTGCTACCAGATAGGGTCCAGGTTGGCATGACCCAACACTTCATGAAGAGCTATTCAGATCTTCTCATCAGAACATGCCACAGGCGCGGGGTGCATGCCATGGGGGGAATGGCTGCACAAATTCCAATTAGAGATGATCCGGTGGCTAATGAGGCAGCACTGGAACTGGTAAGGAAGGACAAGNTTAGAGAAGTGAAGGGAGGGCATGATGGGACATGGGCTGCACACCCTGGTCTAATCCCAACCTGCATGGAGGTTTTCACCAACAACATGGGCAATAATGTTCCTAATCAGATTAACAGGGTGAAACGTGAGGATGCTACATACTTAACTGAACAAGACCTGTTGCAGATTCCCAGGGGAGTCCGCACCATGGAGGGTCTCCGGTTGAATACAAGAGTGGGGATTCAGTACGTGGCAGCATGGCTCACTGGGAGTGGTTCGGTGCCTCTTTACAACCTCATGGAAGATGCTGCCACTGCTGAGATCAGTAGGGTGCAGAACTGGCAGTGGATCAAGTATGGGGTGGAATTGGATGGGGATGGGCTTGGAGTGAGAGTGAGCAAAGAGCTTTTTGGTAGAGTGGTGGAAGAGGAGATGGGTAGGATTGAGAGAGAGGTGGGGAAAGACAAGTTCAACAAGGGAATGTATAAGGAGGCTTGTAAGATCTTCACCAGGCAATGCACATCCACAACACTTGATGATTTTCTCACTCTCGATGCCTATAATTATATAGTCGTGTATCACCCCGTGGAACACTCGAAGCTTTGAATGCTGATCGAATTGGTTCCTATTGTGTCTTGATAATAGTTAATTTGTTGTCTTGAATTCTGTCGTGTGTAAAACTAAGCCAATAATGAAGCTGTCTGTCCCTTGTGTTTTCATCACTTCATGGTTTATTGGAAGGGCCTAGAGGTTCATATTTTCATGCGTGAAATAAAAGAATAAAGTTCGTGATTGTAGTTATATATTTTGAATGATACAACCTATGCTATTATGTTTACTAGCAAAGTTATATGTATCAAAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	189484	192793	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01638	aceB, glcB	EC:2.3.3.9	Carbon metabolism	map01200
			Pyruvate metabolism	map00620
			Glyoxylate and dicarboxylate metabolism	map00630

Gene Ontology

biological_process
GO:0006097 glyoxylate cycle

molecular_function

GO:0003824 catalytic activity

GO:0004474 malate synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000913.1	PF01274.17	Malate_synthase	30	560	6.60E-219

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.502
SRR1783600	control	16.594
SRR1783602	moderate drought stress	23.944
SRR1811619	moderate drought stress	23.606

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.397
DRR006520	Root Summer glycyrrhizin high producing strain	18.297
DRR006521	Root Winter glycyrrhizin high producing strain	49.286
DRR006522	Root Winter glycyrrhizin high producing strain	47.732
DRR006523	Root Summer glycyrrhizin low producing strain	24.470
DRR006524	Root Summer glycyrrhizin low producing strain	24.653
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.143
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.143

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.261
SRR2868004	Drought Stress (root)	4.785
SRR2967015	Control (root)	9.118

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.440
SRR9715740	Leaf	19.044
SRR9715741	Leaf	7.226
SRR9715739	Root	23.524
SRR9715742	Root	7.079
SRR9715743	Root	9.769

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	38.463
SRR8749028	MeJA induced 9h	150.121
SRR8749029	MeJA induced 9h	95.906
SRR8749030	Uninduced	236.640
SRR8749031	Uninduced	181.550
SRR8749032	Uninduced	105.445

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.962
SRR8400027	Control - Root	5.611