Gene detail information of Glyur000010s00000903 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G27160.1 | 1.00E-17 | Ribosomal protein S21 family protein |
| NR | XP_004515839.1 | 3.67E-44 | PREDICTED: uncharacterized protein LOC101494150 [Cicer arietinum] |
| COG | YP_003474112.1 | 8.00E-07 | 30S ribosomal protein S21 [Thermocrinis albus DSM 14484] |
| Swissprot | tr|P82024|RR21_SPIOL | 2.00E-06 | 30S ribosomal protein S21, chloroplastic (Fragment) |
| trEMBL | tr|I1K077|I1K077_SOYBN | 4.00E-44 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G02970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 134330 | 136105 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000903.1 | PF01165.15 | Ribosomal_S21 | 71 | 127 | 1.70E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.624 |
| SRR1783600 | control | 9.685 |
| SRR1783602 | moderate drought stress | 4.834 |
| SRR1811619 | moderate drought stress | 4.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.408 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.746 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.629 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.355 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.709 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.610 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.100 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.532 |
| SRR2868004 | Drought Stress (root) | 5.723 |
| SRR2967015 | Control (root) | 4.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.644 |
| SRR9715740 | Leaf | 0.743 |
| SRR9715741 | Leaf | 1.906 |
| SRR9715739 | Root | 2.805 |
| SRR9715742 | Root | 6.175 |
| SRR9715743 | Root | 5.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.457 |
| SRR8749028 | MeJA induced 9h | 0.072 |
| SRR8749029 | MeJA induced 9h | 0.228 |
| SRR8749030 | Uninduced | 0.136 |
| SRR8749031 | Uninduced | 0.246 |
| SRR8749032 | Uninduced | 0.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.420 |
| SRR8400027 | Control - Root | 7.124 |