Gene detail

Gene detail information of Glyur000010s00000899

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48460.1	6.00E-134	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	AES91099.2	0	GDSL-like lipase/acylhydrolase [Medicago truncatula]
COG	YP_007053367.1	2.00E-18	PEP-CTERM putative exosortase interaction domain-containing protein [Rivularia sp. PCC 7116]
Swissprot	tr\|Q9STM6\|GDL57_ARATH	1.00E-170	GDSL esterase/lipase At3g48460 (Precursor)
trEMBL	tr\|G7JMN9\|G7JMN9_MEDTR	0	GDSL-like lipase/acylhydrolase {ECO:0000313\|EMBL:AES91099.2}

Sequence

Transcript Sequence

>Glyur000010s00000899.1
CAAGGAGACTATCCATACCCCTCAATGCCGGTGGCTTTTAAATTTCTGAATTTTCCAATGTATATATATAAGCATCGAACTCAATGCTAAAGCAAGTGGCCTGCCACTCTTTNGATAACAATTAAGGCACCCTTTTCAAAATGGCTTCTTCTATGGTATCCATCTCTTCAACAATCACTCTCATCACCACCCTCTGCATAGTACTCTCTTCAGTTTTCTCAACTGCATCTTCTGCAGCAGCGCCAACCGTGGAGGGAGGGACAAGACCCTTCAAGAAGATTTATGCCTTTGGTGACTCCTTCACAGACACAGGCAACACCAAGAATGCAGAAGGCCCAACTGGGTTTGGCCATGTATCAAACTCACCATACGGCACCACTTTCTTTAACCACTCCACCAACAGGTACTCTGATGGAAGGCTTGTCATTGACTTTGTAACAGAAGCACTTTCCTTGCCGTACCTTCCTCCTTACCGTCATAGCAAAGGCAATGACACTTTTGGGGTCAACTTTGCTGTTGCTGGCTCCACAGCAATAAACCATGCGTTCTTTGTCAGGAACAACATTTCCCTTGACATCACCCCACAGTCCATCCAAACACAGATGTTGTGGTTCAATAGGTACCTAGANAGCCAAGGATCGTGTCAAAGGGTGGAATCAAAGTGCAAAGACTTTGATGATACTCTGTTTTGGTTTGGTGAGATTGGAGTCAATGACTATGCCTACACTATTGGATCTTCTGTCCCAGATGACACCATANGGAAGCTCGCCATTAGCAGCACCTCAGGAGCTTTACAGACATTGCTTGAGAAGGGTGCCAAGTACCTAGTTGTGGANGGTTTTCCTCCAACTGGTTGCTTGCCGTTGGCCATGTATTTGGCTCCGCAAGATGACAGGGATGACATTGGGTGCGTGAAAAGTGCCAACGACCAAAGCTACAANCACAACCTTGTGCTGCAAGCCAAATTACAGGAATTCAGGAAACAGTACCCCAATGCTGTCATAGTTTATGCTGATTACTGGAATTCCTACCGCACTGTCATGAAGAATCCAGGCAAGTATGGGTTCCAAGAGGTTTTCACGGTGTGCTGTGGAGCAGGAGAACCTCCTTACAACTTCAGTGTGTTTGCCACATGTGGCACACCCAATGCCACCGTTTGCACAACCCCTTCTCAGTACATTAACTGGGATGGTGTTCACCTAACAGAGGCCATGTATAAGGTTGTTTCTGATATGTTTCTCCAAGGAAATTTCAGCCAACCTCCGTTCAATTCCTTGTTGGAAAGCAAAGAGAGGCAGGGGTGAACGGTTCACCCAAAAACAATTTGGTATTTTTGCTAATGTAAATTTAAGTGAAAGAATCAGATCTTATGTTTTTTACTAGAACTCTTGTCTCCTGATCTGCATCATATATATGAGAAGTTAACCGGAGTGTTGTTGTATTTGTATCATTTTCCATGGCTATCTAGAATTTCCATTGGTCTTGGTGAAAACAATGAAGCATCCTTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	123703	125855	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000899.1	PF00657.17	Lipase_GDSL	47	364	9.00E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.024
SRR1783600	control	0.026
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.073
DRR006522	Root Winter glycyrrhizin high producing strain	0.016
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.001
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.068

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.239
SRR2868004	Drought Stress (root)	0.065
SRR2967015	Control (root)	0.068

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.547
SRR9715740	Leaf	6.244
SRR9715741	Leaf	5.476
SRR9715739	Root	0.000
SRR9715742	Root	0.676
SRR9715743	Root	0.325

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.094
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.078
SRR8400027	Control - Root	1.096