Gene detail information of Glyur000010s00000897 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63270.1 | 2.00E-17 | RPM1-interacting protein 4 (RIN4) family protein |
| NR | XP_004515841.1 | 9.79E-36 | PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8GYN5|RIN4_ARATH | 1.00E-08 | RPM1-interacting protein 4 |
| trEMBL | tr|A0A0A0LRE5|A0A0A0LRE5_CUCSA | 2.00E-33 | Uncharacterized protein {ECO:0000313|EMBL:KGN64368.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 113000 | 114690 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000897.1 | PF05627.6 | AvrRpt-cleavage | 3 | 40 | 4.10E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.110 |
| SRR1783600 | control | 0.165 |
| SRR1783602 | moderate drought stress | 0.228 |
| SRR1811619 | moderate drought stress | 0.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.161 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.159 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.156 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.141 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.095 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.995 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.840 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.579 |
| SRR2868004 | Drought Stress (root) | 1.037 |
| SRR2967015 | Control (root) | 1.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.207 |
| SRR9715740 | Leaf | 2.218 |
| SRR9715741 | Leaf | 4.619 |
| SRR9715739 | Root | 0.141 |
| SRR9715742 | Root | 0.093 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.656 |
| SRR8749028 | MeJA induced 9h | 11.734 |
| SRR8749029 | MeJA induced 9h | 7.904 |
| SRR8749030 | Uninduced | 16.851 |
| SRR8749031 | Uninduced | 18.662 |
| SRR8749032 | Uninduced | 13.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.280 |
| SRR8400027 | Control - Root | 0.280 |