Gene detail

Gene detail information of Glyur000010s00000896.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48440.1	9.00E-109	Zinc finger C-x8-C-x5-C-x3-H type family protein
NR	XP_004515843.1	0	PREDICTED: zinc finger CCCH domain-containing protein 43-like [Cicer arietinum]
Swissprot	tr\|Q9STM4\|C3H43_ARATH	2.00E-132	Zinc finger CCCH domain-containing protein 43
trEMBL	tr\|G7JMP1\|G7JMP1_MEDTR	0	Zinc finger C-x8-C-x5-C-x3-H type family protein {ECO:0000313\|EMBL:AES91101.1}

Sequence

Transcript Sequence

>Glyur000010s00000896.2
CACTGCCTCTAGTTTCTTCACTCCTTTGCTGATTCCCCATATAAAAAAGACACAACCTTTTTGTGCCCCTTCACTTTCTTCTCTCCGCAGTGTGGTGAGTGCAGTTTGATCTTTCTTCTTTCTTTTCACTAAAATCAATTTCCGTTATTAGGGTTTGAAATGTGGAGGGAGAATGGAACCCTCTGAATCCGATTTAGCAACAGTTCCCAACGGCAAAGACCCGCAATTGGGTTCTGAGGGGTCACCTCTTTCTTCCCCCAAAGGCCATTCTCAGCCGTCAGATCTCAATCCCGCGGTGGAGGATGATGAAGCACTTGGTGTGGAGCTTCAGAACAAGTTGGATTTGAACGGTGGGGATGAAGGGGTCACCGAAACTGGGGATAAAGTTTCCGACTTTAATAACGATGGTGACGGAAGAGCTTGCGATGAAGAAGAAGAAGAAACTGNTAAGGGTGAAGTGGGTGATGGAGATAGCAGGGGTTGGGAGACCAATAGTTGGAATGAGAATGTGAATGAAGAGGTGGATGGAGGCAGAGAGGGAGATGGAGGTAGTGATGGTGATGGAGTGGAGAAGAAGGAAGAGAAAAGCAGCGGTAGAACTCACCAATACCCTTTGAGGCCTGAAGCTGAAGACTGTGCATTCTATATGAAGACTGGGTCTTGCAAGTTTGGATTCAATTGCAAGTTTAATCACCCCATTAGGAGGAAAAACCAGGCTGTTAATGAGAAGGCAGGGGAAAGGGAAGAACCAGCAGAAAAATCAGGCCCGACAGAATGCAAGGGAGAGAAAGAGTGCCCCTACTACATGCGCACTGGCTCTTGTAAGTTTGGATCGNACTGTAAGTTTAATCATCCTGACCCTACATCTGTCGGAGGATGTGACCCTCCATCAAGGTATGGTAACGGAGGGTCCATTTCATTACAAGGTGTATCACAACCTTCTGTAGCCTCATGGTCTTCTCCAAGAACATTAAATGAAACATCTTTTGTACCAATGATGATGTCGCCTACTCAAGGAGTTGCTCCCCAAAGTTCTGATTGGAATGGATATCCGGCGGCACCTGTCTACTTATCTGAGAGGAGAATGCATCCATCTTCTACCTTTGTCATGAACAACCCAACAATTGAAACAAATGTTTACATGCACAATCAAAAGCAGATGTCAGCAGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTACTTCTTAAAAACCGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTTTGAGACCTGACCAGAATGTCTGCACGCATTACAGTCGCTACGGAATTTGCAAATTTGGACCAGCTTGCAAGTTTGACCACCCAATAAGCTCAATGCCCTTAATGATGCCTGGACTTGGCCAGCAACCCTACACAAACTCAGCTGGTGCTGAGTTTGCTGGGATGGGTGGAAGTGCAGGTGCAAGTGATACCACCATTCAGCAATCTGTGTAAACATCTTTGTCAAGAATCTTTTATCTTTATGGATACACTTCACCCAGACTTGTAGTTTTCTTCTTAAACATGATAGATTTATTTAACTTTTTTTCTGGCTNTGCCCAATGCATGACAAGCTTTGCAGAGTATAGCAATATATATTATATATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	107582	111460	+

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000896.2	PF00642.19	zf-CCCH	153	175	5.20E-08
Glyur000010s00000896.2	PF00642.19	zf-CCCH	204	228	7.90E-10
Glyur000010s00000896.2	PF00642.19	zf-CCCH	340	366	4.10E-07
Glyur000010s00000896.2	PF00642.19	zf-CCCH	388	411	1.30E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	102.595
SRR1783600	control	103.008
SRR1783602	moderate drought stress	94.508
SRR1811619	moderate drought stress	94.236

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	82.371
DRR006520	Root Summer glycyrrhizin high producing strain	82.280
DRR006521	Root Winter glycyrrhizin high producing strain	79.991
DRR006522	Root Winter glycyrrhizin high producing strain	78.004
DRR006523	Root Summer glycyrrhizin low producing strain	98.930
DRR006524	Root Summer glycyrrhizin low producing strain	98.267
DRR006525	Leaf Summer glycyrrhizin high producing strain	60.103
DRR006526	Leaf Summer glycyrrhizin high producing strain	59.712

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	114.916
SRR2868004	Drought Stress (root)	112.882
SRR2967015	Control (root)	121.418

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	70.508
SRR9715740	Leaf	68.975
SRR9715741	Leaf	79.145
SRR9715739	Root	39.923
SRR9715742	Root	63.829
SRR9715743	Root	56.321

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	149.528
SRR8749028	MeJA induced 9h	221.366
SRR8749029	MeJA induced 9h	227.867
SRR8749030	Uninduced	59.194
SRR8749031	Uninduced	61.285
SRR8749032	Uninduced	103.251

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	123.139
SRR8400027	Control - Root	119.794