Gene detail

Gene detail information of Glyur000010s00000892.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24780.2	2.00E-177	Pectin lyase-like superfamily protein
NR	KHN34377.1	0	Putative pectate lyase 22 [Glycine soja]
COG	YP_001628843.1	8.00E-22	hypothetical protein Bpet0241 [Bordetella petrii DSM 12804]
Swissprot	tr\|Q93Z25\|PLY22_ARATH	0	Probable pectate lyase 22 (Precursor)
trEMBL	tr\|I1K070\|I1K070_SOYBN	0	Pectate lyase {ECO:0000256\|RuleBase:RU361123}

Sequence

Transcript Sequence

>Glyur000010s00000892.1
CGAAGCACCTGGGTCCTACATGTTCAGTTTAATCACGCCATTTACCCCGGCTTTATTCCCTTTATATACACCCCCTTCCTACGTACATTCTCCTCATCCTCCCTCTCCGCTTTTCTCCCCCAAACAAACATGACTACTACAACCACCGCCACTTCACTCTCTTTCCTCTTCTTCTTCCTCTTCTCTCTCCTCACCCCAACCCTCATTTCCTCTTCTCCCCTTCAGGACCCTGAATTGGTTGCACAAGAGGTCAACGGGAGGAATTTGGGGTACCTCTCCTGTGGGAGTGGCAACCCCATTGATGATTGTTGGAGGTGTGACCCAAATTGGGAGAAGAACAGGCAAAGGCTAGCGGATTGTGCAATTGGGTTCGGAAAGAACGCCATTGGTGGAAGGGACGGTAAAATCTACGTGGTCACCGATTCCGGCGACGATGACCCGGTGAACCCCAAACCCGGTACCCTCCGTTACGCCGTGATCCAAGACGACCCATTGTGGATCATATTCGCGAGAGACATGGTGATTCAGTTGAAGGAAGAGCTCATCATGAACTCCTTCAAGACCATCGACGGTAGAGGCGCGAGTGTCCACATTGCCGGTGGTCCCTGCATTACGATTCAGTATGTGAACAATGTTATCATTCATGGGATACACATACATGACTGTAAGCAGGGTGGGAATGCTATGGTGAGGGACTCCCCACGGCACTTCGGGTGGAGGACAGTATCGGACGGTGATGGCGTGTCCATCTTTGGGGGTAGCCACGTTTGGGTGGACCATTGCTCCTTGTCTAATTGCAATGACGGGTTGATCGATGCCATCCATGGGTCCACCGCGATTACCATCTCCAACAATTACATGACGCATCATGATAAGGTCATGCTCTTGGGCCACAGCGACACTTTCACCCAAGACAAGAACATGCAGGTCACCATTGCTTTCAACCACTTTGGTGAAGGCCTTGTTCAAAGGATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTATACCCACTGGGAAATGTATGCCATTGGGGGGAGTGCTAACCCAACCATCAATAGCCAAGGCAACAGATTTGTTGCACCCAATGAAAGATTCAGCAAGGAGGTGACAAAGCATGAGGATGCGCCAGAGAGTGAGTGGAAGGGGTGGAATTGGAGGTCAGAAGGGGACATGATGGTAAACGGTGCGTTTTTCACAGCATCAGGGGCAGGAGCCTCTTCAAGCTATGCAAGAGCTTCAAGCTTAAGTGCAAGGCCATCTTCACTGGTGGGTTCCATAACGACCACTGCCGGTGCACTCAACTGTAGGAAGGGTTCTCGTTGCTGATTAATTATGACCCCTCGAGCAAGCAACTGTCTCTGCAGGCCGGTCCATTAATTCCAAAAAAAAAATGAATTGAAATGTAACAAACATTATTATTATTATAAGAAAAACAAAAAGGGAGGGAAAGTGGGAAAAGGAATGGCCCTTATTATAGACTATGGTCTTTTCTTTAGCTATTAGGATGCACTTTCCCTGTGATTTTCTTCCTCCATTCTTTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	62938	65086	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	PL1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01728	pel	EC:4.2.2.2	Pentose and glucuronate interconversions	map00040
			Quorum sensing	map02024

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000892.1	PF00544.14	Pec_lyase_C	132	320	9.40E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	138.070
SRR1783600	control	139.433
SRR1783602	moderate drought stress	12.561
SRR1811619	moderate drought stress	12.515

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	71.236
DRR006520	Root Summer glycyrrhizin high producing strain	70.369
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	25.048
DRR006524	Root Summer glycyrrhizin low producing strain	25.139
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.402
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.169

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	64.772
SRR2868004	Drought Stress (root)	40.714
SRR2967015	Control (root)	41.577

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.702
SRR9715740	Leaf	1.064
SRR9715741	Leaf	4.381
SRR9715739	Root	9.426
SRR9715742	Root	3.840
SRR9715743	Root	5.919

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.513
SRR8749028	MeJA induced 9h	0.430
SRR8749029	MeJA induced 9h	0.350
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	279.825
SRR8400027	Control - Root	245.742