Gene detail

Gene detail information of Glyur000010s00000888

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50260.1	9.00E-126	Cysteine proteinases superfamily protein
NR	KEH31736.1	0	KDEL-tailed cysteine endopeptidase CEP1 [Medicago truncatula]
COG	YP_504536.1	2.00E-23	peptidase C1A, papain [Methanospirillum hungatei JF-1]
Swissprot	tr\|P25803\|CYSEP_PHAVU	0	Vignain (Precursor)
trEMBL	tr\|A0A072UQV2\|A0A072UQV2_MEDTR	0	KDEL-tailed cysteine endopeptidase CEP1 {ECO:0000313\|EMBL:KEH31736.1}

Sequence

Transcript Sequence

>Glyur000010s00000888.1
ATTGATATCTAGCCATAGCATAATAGTAGCAACATGGAAATGAAGAAGCTCTTGTGGGTTGTTCTGTCCCTTGCTTTGGTTCTGGGAGTGGCAGAGAGCCTTGATTTCCAGGAGAAGGATTTGGCATCAGATGAAAGCTTGTGGGATTTGTATGAGAGATNGAGAAGCCACCACACGGTTTCTAGAAGCATCGATGAGAAGCACAAACGATTCAACGTGTTCAAAGCCAACGTGATGCATGTCCACAACACCAATAAGCTGGACAGGCCTTACAAGCTTAGGCTGAACAAGTTCGCTGACATGACCAACCTTGAATTNAGGAGCATCTATGCTGGCTCCAAGGTTGGTCACCTCAGAATGTTCCGTGGCGCAGCACGTGGCAACGAGACCTTCATGTATGAGAACGTTGACAGGGTTCCTGCTTCAGTAGATTGGAGGAAGAAAGGCGCTGTCACTGGTGTAAAGGATCAAGGTCACTGTGGTAGTTGCTGGGCGTTTTCAACTATTGTAGCTGTTGAAGGTATTAACCAAATCAAGACACATAAGCTAGTATCCTTGTCTGAGCAAGAACTTGTGGATTGNGACAATAAAGAGAATGCAGGATGCAATGGTGGGTTAATGGAATATGCGTTCGAGTTCATCAAGCAGAGCGGTATAACAACCGAAAGCAATTACCCTTATTCTGCACAAGATGGAACCTGTGATAAACCAAAGGAGGATGAGCCAGCAGTGTCAATTGATGGACATGAGAATGTCCCAGTGAACAATGAGGCCGCATTGCTGAAAGCTGTTGCCAACCAACCTCTAGATCATGGGGTAGCGATTGTGGGATATGGAGCAACTCAAGATGGAACCAAATATTGGATAGTGAAGAACTCTTGGGGAGCCGAATGGGGAGAACAGGGTTACATCAGAATGCAAAGGGGCATATCTCACAAGGAAGGTCTGTGTGGCATAGCAATGGAGGCTTCCTATCCAATCAAGAAGTCCTCTACTAACCCAACAAAAAGTTCACTTCCTAAAGACGAGCTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	40103	42635	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0008234 cysteine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000888.1	PF08246.7	Inhibitor_I29	46	94	5.20E-10
Glyur000010s00000888.1	PF00112.18	Peptidase_C1	128	258	1.70E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.944
SRR1783600	control	0.911
SRR1783602	moderate drought stress	0.366
SRR1811619	moderate drought stress	0.330

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.518
DRR006520	Root Summer glycyrrhizin high producing strain	4.042
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	7.897
DRR006524	Root Summer glycyrrhizin low producing strain	8.137
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.089
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.089

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.171
SRR2868004	Drought Stress (root)	3.263
SRR2967015	Control (root)	6.950

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.306
SRR9715741	Leaf	0.303
SRR9715739	Root	0.027
SRR9715742	Root	4.433
SRR9715743	Root	3.235

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.041
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.602
SRR8400027	Control - Root	3.356