Gene detail

Gene detail information of Glyur000010s00000879

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50250.1	8.00E-83	chloroplast RNA-binding protein 31B
NR	XP_004515855.1	1.67E-158	PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cicer arietinum]
COG	YP_002461512.1	2.00E-21	RNP-1 like RNA-binding protein [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|Q9FGS0\|CP31B_ARATH	4.00E-108	RNA-binding protein CP31B, chloroplastic {ECO:0000305} (Precursor)
trEMBL	tr\|A0A072UQW2\|A0A072UQW2_MEDTR	2.00E-143	31 kDa ribonucleoprotein {ECO:0000313\|EMBL:KEH31746.1}

Sequence

Transcript Sequence

>Glyur000010s00000879.1
GTCATCAATTCCAAATCCAAAACCCCTTCACTTCACTTGTTCTATCTCAATTCAATTCCTACCCCTTCTTATCCACAACCAAACCAGAGCGTTGTGCTGTGTTGCTCTCCTCTCCCTTTGCCTTTGCCTATGTCTATCACTGCCATGCCTGCGTTCAAGTCCCTCACAATGGCAGCAGAATCGTGCCTACTCTCTCAGCCCTCACTCTTCTCCACCAAAACCAAACACCCTTTCATCTCTAATTCTCTTAAGCCCTTCAAGCGGCAACAACACCCATCCCACAATTCTTCACTCTTCTCACCNTCTCTCTCCCTCACAAGGAAGACGACCCACCATTCCTCTCCCCTCACATTCGTAGCACAGACATCGGATTGGGCTCAACAAGAGGAAGAAGAAGAAGGAGCAGCATGGGAGAACCAAGGCGAACCCAAATGGGGAAATGAAGATGATGATGAAACCCAGAGCGAAGGAGAGGTTGTTGAAGATGNGAACTTTGGGGAAGTGGGTTTTGCTGAACCATCTGAAGATTTGAAGATCTTCGTTGGAAACTTGCCTTTTGATGTTGACAGTGAGAAATTGGCCATGCTCTTTGAACAGTCTGGGACGGTGGAGGTTGCCGAGGTAATTTACAATAGGGCCACTGACCGAAGTCGTGGGTTTGGATTTGTAACCATGAGTACNGTTGAGGAAGTTGAGAAGGCTGTGGATAGGTTCAGTGGCTACGAGTTAGATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAGAGGATCACGGCCTGAACGCCCACCACGTACCTCTGACTCTGCTTTAAGAGTCTATGTTGGTAACTTGCCATGGGATGTTGACAATGCTCGCCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAAAGTGCTCGGGTAGTCTATGACAGAGAAACCGGTCGATCTCGTGGTTTTGGCTTTGTCGCAATGTCCAGTGAGACCGAGACGAATGATGCCATTGCTGCTCTTGACGGTCAGAGCTTGGATGGAAGGACAATCAGAGTGAGTNTTGCTGAGGAAAGGCCAAGGCGTAGCTCTTTCTGAGTGTAATTCAAGTAATCCTCAATGTTCGCTGCTAGACTTGCTTTTTTTTCTTTTTCTTCTTCTTCTTTTATGGTTGAGGATATAATTTAAATTTTTTTATTTTAAATTTCCCTTCTTNGGTAGATGGTTTCAGATTATATTTGCATGTTTTAATGTCATTAATTTGATGTTCAGATATAAATTATTAAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	1226	3927	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000879.1	PF00076.17	RRM_1	136	205	6.80E-20
Glyur000010s00000879.1	PF00076.17	RRM_1	230	300	3.90E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	58.194
SRR1783600	control	58.270
SRR1783602	moderate drought stress	40.570
SRR1811619	moderate drought stress	40.465

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.171
DRR006520	Root Summer glycyrrhizin high producing strain	32.912
DRR006521	Root Winter glycyrrhizin high producing strain	28.873
DRR006522	Root Winter glycyrrhizin high producing strain	27.448
DRR006523	Root Summer glycyrrhizin low producing strain	27.382
DRR006524	Root Summer glycyrrhizin low producing strain	27.544
DRR006525	Leaf Summer glycyrrhizin high producing strain	208.285
DRR006526	Leaf Summer glycyrrhizin high producing strain	206.528

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.485
SRR2868004	Drought Stress (root)	22.737
SRR2967015	Control (root)	31.641

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	157.376
SRR9715740	Leaf	192.159
SRR9715741	Leaf	112.345
SRR9715739	Root	38.076
SRR9715742	Root	35.175
SRR9715743	Root	38.083

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.092
SRR8749028	MeJA induced 9h	12.648
SRR8749029	MeJA induced 9h	11.458
SRR8749030	Uninduced	4.714
SRR8749031	Uninduced	2.217
SRR8749032	Uninduced	3.693

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.704
SRR8400027	Control - Root	52.307