Gene detail

Gene detail information of Glyur000009s00001488.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53970.1	1.00E-118	Tyrosine transaminase family protein
NR	XP_004487261.1	0	PREDICTED: probable aminotransferase TAT2-like isoform X1 [Cicer arietinum]
COG	YP_004628567.1	1.00E-43	tyrosine/nicotianamine aminotransferase [Thermodesulfobacterium geofontis OPF15]
Swissprot	tr\|Q9FN30\|TAT2_ARATH	4.00E-145	Probable aminotransferase TAT2
trEMBL	tr\|A0A072VBJ4\|A0A072VBJ4_MEDTR	0	Tyrosine/nicotianamine family aminotransferase {ECO:0000313\|EMBL:KEH39172.1}

Sequence

Transcript Sequence

>Glyur000009s00001488.2
ATGGAGAAGGGAATTAGCGAGAAGTGGAAGTTCCAAGGGAACAAAGGGCTGAATGCTTCATCCATATCCGTGAGAGGGGTCTATAACATGTTGATGGACGGCATAGACAACAATAACGAAGACAAGAAACCCGTGGTTCGTCTCTGTCGTGTAGATCCCACGGATAACCCACTGTTTCAGACTACCTCTGAAGCTCCTGATGCTGTTGCAACTGCCGCTCACTCTTTCAACTTCAACTGGCTATTGCAAATTATCTCTCTTTTATCACCAGAGGATGTTTTTCTCACGGTTGGTGGCACACAAGCTATAGATATAATCTTACCTGTCCTTGCACGTCCCGGTGCCAACATTCTCCTTCCAAGACCAGGGTACCCACAATATGATTCTCGTGCCGCTTGTTGTCTCCTTCAAGTTCGGTACTTTGATCTTCTTCCTGAGAGAGGATGGGAGGTTGACCTTGATTCCCTTGAAGCTCTAGCAGATGACAACACTGTGGCCATGGTCCTCATCAATCCTAGCAACCCATGTGGGAATGTGTTCACATACCAACATTTAAAAATGGTTGCTGAGACTGCTAGGAGACTTGGAATCTGTGTAATTTCTGATGAAGTTTATGCACATGTAGCGTTTGGAAGCAATCCATTTGTGCCCATGGGAGTGTTTTCATCAATAGTTCCAGTTATTACAATTGGGTCCTTGTCAAAAAGATGGTTAGTTCCTGGTTGGAGAATTGGTTGGATAGCCACCTGTGACCCCAAAGGAATTTTTAAAAAGACGGGGGCAGCAGTACCTCAAATCCTTGAGAGAACAAAAGCTGATTTCCATTTAAAGAATGTCAATATGATGAGGGAGGCTGCAAACATGTTCTATGATGTATGTAAGGAGATCCCTTGCTTGACATGCCCTCACAAACCAGATGGAGCCATGTCTGCGATGGTGGAGATTAACTTTTCACAAGTTAAGGGCATTACTGATGATGTGGATTTCTGTGTGAAGCTGGCCAAAGAGGAATCTGTGATTCTTCTTCCAGGTGTTACTGTTGGACTAAAGAATTGGCTTCGGATTAGTCTTGCTGTTGACCCTTCTGATCTCGAAGAGGGCCTTAGCAGGCTAAAAGCATTCAGCCTTCGGCGTGCAAATGTGTCATAAAATCATATGCAATCCGGGAGAGTTGGAAGGAGCAGTTGTGCTGACTCCTTAGGTCTATTGCATTCCATTGAGACCATTTATTTGGCAAAATATATGTATAAATATAATGGCATTTTATCTTATGATTTGATATTCAGTAGTGGTGGTTTTTATTTTATTCTCCTCCTCCTCCTCCTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	656038	658921	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00815	TAT	EC:2.6.1.5	Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Cysteine and methionine metabolism	map00270
			Cysteine and methionine metabolism	map00270
			Cysteine and methionine metabolism	map00270
			Tyrosine metabolism	map00350
			Tyrosine metabolism	map00350
			Tyrosine metabolism	map00350
			Phenylalanine metabolism	map00360
			Phenylalanine metabolism	map00360
			Phenylalanine metabolism	map00360
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
			Ubiquinone and other terpenoid-quinone biosynthesis	map00130
			Ubiquinone and other terpenoid-quinone biosynthesis	map00130
			Ubiquinone and other terpenoid-quinone biosynthesis	map00130
			Isoquinoline alkaloid biosynthesis	map00950
			Isoquinoline alkaloid biosynthesis	map00950
			Isoquinoline alkaloid biosynthesis	map00950
			Tropane, piperidine and pyridine alkaloid biosynthesis	map00960
			Tropane, piperidine and pyridine alkaloid biosynthesis	map00960
			Tropane, piperidine and pyridine alkaloid biosynthesis	map00960
			Novobiocin biosynthesis	map00401
			Novobiocin biosynthesis	map00401
			Novobiocin biosynthesis	map00401

Gene Ontology

biological_process

GO:0006520 cellular amino acid metabolic process

GO:0009058 biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0008483 transaminase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001488.2	PF00155.16	Aminotran_1_2	90	371	1.10E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.441
SRR1783600	control	22.718
SRR1783602	moderate drought stress	15.287
SRR1811619	moderate drought stress	15.429

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.485
DRR006520	Root Summer glycyrrhizin high producing strain	18.502
DRR006521	Root Winter glycyrrhizin high producing strain	8.118
DRR006522	Root Winter glycyrrhizin high producing strain	8.663
DRR006523	Root Summer glycyrrhizin low producing strain	23.132
DRR006524	Root Summer glycyrrhizin low producing strain	24.441
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.458

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.953
SRR2868004	Drought Stress (root)	38.095
SRR2967015	Control (root)	36.127

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.671
SRR9715740	Leaf	37.370
SRR9715741	Leaf	31.245
SRR9715739	Root	25.252
SRR9715742	Root	13.204
SRR9715743	Root	16.146

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.777
SRR8749028	MeJA induced 9h	9.774
SRR8749029	MeJA induced 9h	9.393
SRR8749030	Uninduced	5.268
SRR8749031	Uninduced	1.614
SRR8749032	Uninduced	3.080

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.530
SRR8400027	Control - Root	37.235