Gene detail

Gene detail information of Glyur000009s00001484.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03790.1	2.00E-57	Zinc finger C-x8-C-x5-C-x3-H type family protein
NR	XP_003540372.2	6.60E-151	PREDICTED: zinc finger CCCH domain-containing protein 2-like [Glycine max]
Swissprot	tr\|Q9ZWA1\|C3H2_ARATH	3.00E-83	Zinc finger CCCH domain-containing protein 2
trEMBL	tr\|I1LUH8\|I1LUH8_SOYBN	8.00E-152	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G33320.1}

Sequence

Transcript Sequence

>Glyur000009s00001484.1
ATGAGCACTGTCTGTGCTGAACAGCAACAACAACACCAACACAAGTTCCACTCTTCCCACCAACTCCTCTCCCCCAAAAAATCACCTTTAAGAGAAATCGACATCCCACCGAGGAAGCTCCTCACCCGCCGCGCCACCATCCTGCACAAGTTCCTCCCCCACAACGACTCCGACTCGGACTCCGACGACCCTTACTCCTCCGACCACTTCCGGATGTACGAGTTCAAGGTCCGACGGTGCACCCGCAGCCGGAGCCACGACTGGACCGACTGCCCCTTTGCCCACCCGGGCGAAAAGGCCCGTCGCCGCGACCCTCGGCGGTACCACTACTCCGGGACGGTGTGCCCGGAGTATCGCCGTGGAGGGTGTAGCCGTGGCGACGGCTGCGAGTTCGCTCACGGCGTTTTTGAATGCTGGCTCCACCCTGCAAGGTACAGAACAGAGGCATGCAAAGATGGGAAAAACTGCAAGAGAAAAGTTTGCTTCTTTGCACACACTCCTCGCCAGCTCAGAATCTTACCCGTCACTTCTTCTTCTTCTCATTCTTCAAGGGAATTATTCTCGTGCAATAACAATAACAAGAAGAACAAGCTCTTCAACCTGAACTTGAACCCTGTTTCTGCTTCTTCTTCTTCTCCCAGATCATCAAACAACAATAATAACTGTTGTTTGTTTTGCCATTGTGGTGGTGCTAATCATAATTACAATTCCACTGCTTCTCCAACTTCCACGCTTTTCGGCATGTCGCATTTCTCGCCGCCGGTGTCTCCACGAAATGGGGTTTCTTCTCTGAATTCCCCTGTTTCTCGCTTTGGTTACAAAGATGTTCTAGCTGAGCTTATGGGTTCCTTTGAGGGGTTGAGTTTCAATAATATTGAGGGTACTGCTACTACTTCATCGCCTAGTGCCAAAATGGGTCCCAATAATAATAACTTGGCTTGGCTTGATGTTGTTGATGTTCCTAATTTCAACTTTGAGGAGCAGCAGCAGCAACAGTACATTGTTTCGCCTTCTGCGGTCTCTAATTCTTGTTCTTCTTATTTTGGCTGTGATCAAGATCAGCAAAAGTTTATTCTTTCACCTTCCACTACTCATAATCAGAACCCAACAACAACTGGGTTCAGTAACAACAGATTTTTCTTCAGTAATAATGAGAACAAGGTTGTTGGTGGTGGTGACGTGAATGCCCCAGATCTCGGGTGGGTTAATGATCTGCTGATGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	629145	630413	-

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001484.1	PF00642.19	zf-CCCH	114	134	0.00027

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.905
SRR1783600	control	0.858
SRR1783602	moderate drought stress	0.560
SRR1811619	moderate drought stress	0.553

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.088
DRR006520	Root Summer glycyrrhizin high producing strain	0.088
DRR006521	Root Winter glycyrrhizin high producing strain	11.605
DRR006522	Root Winter glycyrrhizin high producing strain	10.885
DRR006523	Root Summer glycyrrhizin low producing strain	0.270
DRR006524	Root Summer glycyrrhizin low producing strain	0.273
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.171
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.174

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.649
SRR2868004	Drought Stress (root)	0.271
SRR2967015	Control (root)	0.816

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.400
SRR9715740	Leaf	0.233
SRR9715741	Leaf	0.213
SRR9715739	Root	0.925
SRR9715742	Root	0.712
SRR9715743	Root	0.560

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.058
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.140

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.062
SRR8400027	Control - Root	2.153