Gene detail

Gene detail information of Glyur000009s00001481.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15270.1	6.00E-31	squamosa promoter binding protein-like 5
NR	XP_002275728.1	3.47E-63	PREDICTED: squamosa promoter-binding protein 1 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q38741\|SBP1_ANTMA	2.00E-40	Squamosa promoter-binding protein 1
trEMBL	tr\|E0CTG4\|E0CTG4_VITVI	1.00E-63	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21879.3}

Sequence

Transcript Sequence

>Glyur000009s00001481.1
GTCTACGCACTTCCCCGGTAGATATATGGAGATAGAAGAGTAGTGTGTGTTGAGTTCTAAGTGTTTCANTTCAATTTCAAATCTCTCAGCGTCTTCTACAGTCCCATGTACCACCACAACAGAAAAAAACAAAAACAAAAGCATTCNAGAGAGGTGGAGAAAAAAATGGAGCACTTTGTGGTCCTCACTTACTCCCTCATTCGCNCACNCACACACACACCCTTTTTTCTCTCCTCAATATAATAATTCCACTTCACCCTCTAACTTGCTTCCAAGTTGCAACCATTCTCACCTCTTCTTTTTTTCCTCTTCACACACCCTGATCAGTACTAATTCATGGAGTACGGGTTGGAGCCAAAGGTGGTGATGATGATGGGGAAGAGGGAGGATCAAAATGGGTACTCGGAGGAGGATATTAACAAGAAGAAGAAAGGGGTGGTGATGGTGGGAGGTTCAAGTTGTGGTGGTGCTGGGAAGAAAGGGTCTGGTAGCAGTAGCAGCAACATCATGCGGNGTTGTCAAGCGGAGAAGTGCAACGCGNATCTTAACGATGCCAAGCAGTATCACAGGAGGCACAGGGTGTGTGAATACCATGCCAAGGCTCAGATTGTGCTTGTGGCTGGAACTCCACAACGCTTTTGTCAGCAATGCAGCAGATTCCACGAGTTAGCTGAATTTGATGACACAAAGAGAAGTTGCCGAAGGCGTTTGGCTGGACACAATGAAAGGCGAAGGAAGAACTCAGAGTCTCAAGCAGAAGGATCAAGCCGCAAAGGGTCATCATCAGGTCCTCATCAGTTGAAGGACCAATTTGCTTGTGGCCAGGCTGGTGATAATAAAGGAAGAATTCAGATATCAATTCAAGAAAATGCTGCTGCTTACAAACATTTTCAGATTAGATGAAGATCTCATCATCTGCTTTGATTGTGAAAGTTTGCTCTCTCTCTTCTGTCATCCTGCATCCTGGGGGTGTATTGTATTAGAACTATATTATCCCTTGTCACAACAATATTTGTGGTGGTAAGTAAAGGTATATATGCATTTAAATAAATTAAGAAATTAAAAAAAAAAAAGAGTGAGAAACATTGAGACAACCATTTCATCATGGTGTTGCAGTTACCACTAGCTATTGCAGTAGAAATTATGCACTTGTGCCCATTATGACACGCATGCTCAAATCGTTAAGCATGCTTGACATATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	607823	610584	+

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001481.1	PF03110.9	SBP	61	136	9.30E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.811
SRR1783600	control	0.764
SRR1783602	moderate drought stress	0.969
SRR1811619	moderate drought stress	0.938

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.255
DRR006520	Root Summer glycyrrhizin high producing strain	1.107
DRR006521	Root Winter glycyrrhizin high producing strain	0.804
DRR006522	Root Winter glycyrrhizin high producing strain	0.884
DRR006523	Root Summer glycyrrhizin low producing strain	0.358
DRR006524	Root Summer glycyrrhizin low producing strain	0.453
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.514
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.769

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.029
SRR2868004	Drought Stress (root)	1.696
SRR2967015	Control (root)	1.224

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.528
SRR9715740	Leaf	9.878
SRR9715741	Leaf	14.800
SRR9715739	Root	0.689
SRR9715742	Root	1.987
SRR9715743	Root	1.744

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.113
SRR8749028	MeJA induced 9h	2.620
SRR8749029	MeJA induced 9h	2.749
SRR8749030	Uninduced	0.423
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.233

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.833
SRR8400027	Control - Root	2.164