Gene detail

Gene detail information of Glyur000009s00001472.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53050.1	0	Protein kinase superfamily protein
NR	XP_003539536.1	0	PREDICTED: probable serine/threonine-protein kinase At1g09600-like [Glycine max]
COG	YP_003371239.1	6.00E-22	serine/threonine protein kinase [Pirellula staleyi DSM 6068]
Swissprot	tr\|F4I114\|Y1960_ARATH	0	Probable serine/threonine-protein kinase At1g09600
trEMBL	tr\|I1LUH2\|I1LUH2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G33230.1}

Sequence

Transcript Sequence

>Glyur000009s00001472.1
GAGAGAGAGAGGTATTTTGACTGAGCTTAGTCGGCAAAAGCCGTCGTGTAAGGATAACGATCTTCTTTTTTATTTATGATGAATGAATGAATACGCGTTGAACTTTCAGCCACCCTTTCTTTCTTATTAAGTTTATCCTACATTCCATTCTTACCCTCATTCCCATTTACTGATTTACAGCTCCAAAAAAGTATACCCATTATTATTTTAATTATTTATATTATTTATACTCCTCCACTCCAGTGTTATGATCATCAAAGCCCCCCTCTCGCTTTTTTATTTTGTTGGTAAAATGTTTCCCTTTTTTAAAAGTTGACGGTTATTGGTGTAGTGTTACAGTGAGGGGGTTCTGAATTGCGTATTTGATTGAAGTCGCTGACTTTGGAATTGGGTTAGTTTGAAGTTTTCAGAGAGACACAGGGAGCGTGGAATTTAGCTTTTTTTTTTTTGAAGTTTTCAGAGAGACACAGGGAGCGTGGAATTTAGCTTTTTTTTTTTTGAAGTTTTCAGAGAGACACAGGGAGCGTGGAATTTAGCTTTTTTTTTTTTTTTCTCTTTCTCAAACAGCTTATAAGGAGAGATTTCCAACTTTTTTTTTGGGGGGGAATATTATGCACGAATAATTAGTTCGTGACTTGCATGAATTTGTACGGAGGTGTTGTTAATATTTTAGCTGGAGGTTGGTGGTGATCCATGTTATTGAAGGATAACAATATTGTATAGTTGAATAATAGCTTGTCACTGAAAATGGGTTGCATAACTTCCAAGAGTTCAGCTGTGGATGATAGCCGGGAAGGTTTGACAAATGATTTAACATCATCAAGCAAAAGGACCTCAGAGATGAAGGTTTCACGATTGAATACCAAGAAAAGGGTCGAGGGAGTTTGGAAGAAAGATAAGTCCTTTGATGGTGTTGAGTCTATTGACATGAAAGTTTCATTGATTGACAAGGAAGGCAATGGTTCGGTGTGGCTGTGTGATGATCAGAATGGGAAGAAGAAAATGGAGAAACCCGAATTGACTGTTATTGATTATCTTGGTCTTGGAAGGCTTCCAAAGAACTCAGAAGGAGAGCAAGTTGCAGCAGGATGGCCAAGTTGGCTTTCTTCTATTGCCGGTGAAGCTATCCGGGGGTGGATACCACGGNGTGCAAATAGTTTTGAGAGGTTTGATAAAATTGGCCAAGGAACTTACAGCACTGTTTATAAGGCACGCGATTTGATTCACCAAAAGATTGTTGCCTTGAAGAGGGTACGCTTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCTTGTTCTGCGTAGGCTTGACCATCCAAATGTAATAAAGTTGGAGGGCTTGATAACATCGCAAACATCTCGCAGCTTGTACCTTGTTTTTGAATATATGGAACATGATCTTACAGGACTTGCATCAGGACCTGCCATTAAGTTTTCTGAACCACAGATTAAATGCTACATGCATCAGCTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGATGGCAATGGCATTTTAAAGATTGCAGATTTTGGTTTGGCAAATTTTTTTGAGCCCCATCACAGTGTTCCATTGACCAGCCGCGTAGTAACTCTGTGGTATAGACCACCAGAACTTTTACTTGGAGCATCTAATTATGGAGTTGCAGTGGATATGTGGAGCGCTGGTTGTATACTGGGGGAACTATACTGTGGCAGGCCTATATTGCCTGGAAAAACAGAGGTTGAGCAATTGCACAAGATTTTTAAACTTTGTGGCTCACCCTCTGATGACTATTGGCGTAAACTGNGGCTGCCCCATTCAACAGTATTCAGGCCTCCACACCATTATAGGCATTGTGTGGAAGAAACATTTAAAGAATATCCATCTGCTGCTGTGAGGCTTATAGAGACCCTACTTTCTGTAGATCCTACGCTTCGAGGAACAGCAGCTACAACTCTGAAGANTGAGTTCTTTTCATCGGAACCCCTTGCTTGTGATCCATCAACTTTACCCAAATATCCTCCCAGCAAAGAGATTGACATTAAATTGCGGGAAGAAGCAACAAGAAGGCAAAGAGCTCTTGGGGGGAAGGAGCAAAATGTTGGACCTCGTGTTAGACAAGAGAAAGAACCCCGGACATTTGTCTTATCCAAAGACAATGCTGACTCCCGCATATCAATGCAGCAAGGGCAATGCCTTCCAAACTCGACGAGCCAGAATGAATCGTTCAACCTTCACAGAGTACCTATGTCTGGATTTTTGGTTTCGCCACACGAACAGTCAAGTGATGTTAAAGAAATGGCAAATTATTTCTCTGGGCCTCTTTATCAGAGGCCTTCACATTCAGGTTCACTGGTTCCCGGTTCGGGCTGGGACAAAGTTGGAAAGGGAGCTGGTGAGCGGCGGCCTCCTATTTCAAATAAAGTCAACCTATCAAAACAAACTAGGACTTCATTGTCTAGAGACCAAAAAGAAAACCCAGCTCCCTTGAGGCCTCGAGAAACAATTCGAGTACAAAATCCTTTGGAGTCAACTAATGGATCAGGGTCAAGAAGGTGGCATGATAGAAGACTTCATTCTCAGAAAATTGATCTCAGCGAAATAGAAAATGGAAAGGTCTCCACTGAAACATCATATCTGGACGCACACGGATCTAGGGGAAACAAGATCTATATGTCTGGTCCATTGCTGGTTTCATCAAACAATATGGATCAGATGCTCAAAGAGCGTGATCGAAAGATCCAAGAATATTCAAGACGAGCCCGAANTGACAAGTCTAAAGGTGAAAAAGTTCATGCACAGAGTCAATTACGTACTTATTTCTAAATATGAAGCTAGATACATTTTTTGTGACAATATTATTTGTCTCTCAATATTATAGAGAGATAGGGAANGGGGGGGAGTGAGACAGAAATAGGGAGAGAAAGAGTGTGTTCATGCACGCTCGTTTGTAAATAAGTTGTAGGTTTTTATAACAAGAATTTGTTGTTCCTTCCATTCTTTATGTTTTACCCTTATGTTAAGCAATTTAATAGAAAATTTGAATTACAAAAACTCAAAGCCATGTAACTATTGCAGTATCCGTCAATAGTCACGTTTCTGTGCAAAACCACCATACATTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	535067	541104	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001472.1	PF00069.20	Pkinase	139	422	3.80E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.691
SRR1783600	control	6.832
SRR1783602	moderate drought stress	6.136
SRR1811619	moderate drought stress	6.105

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.877
DRR006520	Root Summer glycyrrhizin high producing strain	8.680
DRR006521	Root Winter glycyrrhizin high producing strain	10.100
DRR006522	Root Winter glycyrrhizin high producing strain	9.824
DRR006523	Root Summer glycyrrhizin low producing strain	18.367
DRR006524	Root Summer glycyrrhizin low producing strain	18.435
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.609
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.658

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.555
SRR2868004	Drought Stress (root)	21.675
SRR2967015	Control (root)	19.812

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.124
SRR9715740	Leaf	14.922
SRR9715741	Leaf	23.377
SRR9715739	Root	2.090
SRR9715742	Root	9.344
SRR9715743	Root	9.012

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.788
SRR8749028	MeJA induced 9h	43.692
SRR8749029	MeJA induced 9h	15.830
SRR8749030	Uninduced	28.999
SRR8749031	Uninduced	33.179
SRR8749032	Uninduced	14.519

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.001
SRR8400027	Control - Root	13.582