Gene detail

Gene detail information of Glyur000009s00001469

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20680.1	9.00E-166	Glycosyl hydrolase superfamily protein
NR	XP_006594850.1	0	PREDICTED: mannan endo-1,4-beta-mannosidase 2-like [Glycine max]
COG	YP_003324408.1	5.00E-66	glycoside hydrolase family protein [Thermobaculum terrenum ATCC BAA-798]
Swissprot	tr\|Q7Y223\|MAN2_ARATH	0	Mannan endo-1,4-beta-mannosidase 2 (Precursor)
trEMBL	tr\|I1M3S5\|I1M3S5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G37250.1}

Sequence

Transcript Sequence

>Glyur000009s00001469.1
ACCCGTTACTAAATTTTGTTCCTCTGAGGAGATAAACACCGTATAAAGACTGGGACTTTGACGGTGGGACGGAGTAGTAATAGGTTCCTTCAACTCCAACTTCAACCGCTACCAACATTTCACCGCACACTCACCATCACTCTCAACTCAAGTTACTTTTTCCATTTTTCAAACCCAATCATCTCTGTTAATTTGGACTATTTTGAGGATAAACATGTGATTCACTTTCAGTTCCTGTTCCTTTTCCTTGCCTTGTGTGAGGTGGAACTGCAAGCAAAGCAAAGCAAAGCATTTTCTCATTCCATGCAAGAGTTAATTCCCTTCCTCAGTTCACACTATAAATAAAATNCCCCAATTATAGCCCACTCTACAGCTACTTACTACTACAAACCTAACAAAAATCTCTTGAATTGATGCCTTCTTTTTGGGGGTCGGTGATTTCTTCTGAAACTCGTTAAAAGTTAATGCCTTTNAAGTCCATTCTCACTCTTCTCACTTCTCAGAGAGAGATCTAAACATTTTAACCATTTGGGGTGTAAAAAACAATCAAATTCTCTTCTGGGTCTAACTGAGGTGTGTGAGGTTCAGCAATCTTCATAATCAAATTCAATTGTCACTAAATTAGTGACCCTTTGAGCAAAGGGGCCAAAACTCAAAAGGGTACCCTGAAAACCTCTCCAATTTGTTGAATTTCTTCCTCTCAAATAATGGTGGCTGGGAATGGCCTGTTTTATCCAATTCTGGGTTTTGCATCGTTTGTGGTTTTCATTTACATGTCATTTGGAGGGTTAAGGNTCAGTTTTGAGGAAGGGCCAGAGTTGGGTTTTGTGGAGAGGAATGGGACGCAGTTTGTGGTTGATGGGAANGCGTTTTACGTGAATGGGTGGAACTCTTACTGGTTGATGGTCCAATCGGTGGATGTTTATTCGAGACCTAGGGTCGGTGAAATGCTGAAAACCGGTGCCAAGATGGGACTCACTGTTTGTCGAACTTGGGCTTTCAATGATGGTGGTGACTATTATGCCCTTCAAACTTCCCCTGGTCGCTTCGATGAGCAAGTTTTCAAGGCCTTGGATTATGTCATAGCAGAAGCAAGGCAACATGGAATTAGGCTGCTCCTTAGCTTAGTAAATAACTTGACACCATATGGGGGGAAGACTCAGTATGTCAAATGGGCATGGCAAGACGGGGTAGGAGTAAGCTCCTCGAATGATTCTTTCTTCTTTGATCCATCAATCCGTAGTTATTTCAAGAATTACATCAAGACTGTCTTGACAAGGAAAAATACTATCACTGGAATTGAATATAGAAACGACCCCACCATTTTTGGTTGGGAATTGATTAATGAACCTCGTTGCATGTCTGATCCTTCTGGGGACACTCTCCAAGGGTGGATAGAAGAAATGTCAANTTTTGTCAAATTGATTGACAAGAACCATCTGGTGACTGTTGGGCTTGAAGGTTTTTATGGTCCTAATGACCCAAAAAGTTCGACTGTGAACCCCTCATATTGGGCATCCAGACTTGGGTCTGATTTTATCCGGAACAACAAAATCTCTAATATTGATTTTGCCTCTGTTCATATCTACCCTGACCAATGGTTTCATGAGCAAATAATTGAAGATCAACTTAAATTTGTCTCCAAGTGGATGCTTTCCCACATTGAAGATGGAGACAAAGTATTGAAGAAGCCCATCTTGTTCTCAGAATATGGACTATCTAAAACGAATCAGAACTTCTCTGTGCCTGACAGAGAAAAGATGCATAAAACCATTTTAGACATAATTTACAAATCTGCAAGGAAAGACAGGTCTGGAGCAGGTGCTCTTGTTTGGCAATTCCTAGTTGGGGGAATGGNGGATTATTCTGATGAATATGGGATGGTCCCAGGGGAAAGTTCTTCAACCCATTCACTATTCATTAAACAGTCATGCAGATTGGCCAGAGTCAAAGGATGGACCCAAAAGGATGTAGATTTCAAACAGCTTTGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	521908	526725	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K19355	MAN	EC:3.2.1.78	Fructose and mannose metabolism	map00051

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001469.1	PF00150.13	Cellulase	77	377	1.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.577
SRR1783600	control	8.496
SRR1783602	moderate drought stress	6.554
SRR1811619	moderate drought stress	6.469

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.263
DRR006520	Root Summer glycyrrhizin high producing strain	11.865
DRR006521	Root Winter glycyrrhizin high producing strain	2.615
DRR006522	Root Winter glycyrrhizin high producing strain	2.722
DRR006523	Root Summer glycyrrhizin low producing strain	14.416
DRR006524	Root Summer glycyrrhizin low producing strain	14.220
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.816
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.564

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.442
SRR2868004	Drought Stress (root)	9.358
SRR2967015	Control (root)	10.963

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.092
SRR9715740	Leaf	18.104
SRR9715741	Leaf	11.371
SRR9715739	Root	3.281
SRR9715742	Root	10.941
SRR9715743	Root	8.244

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.007
SRR8749028	MeJA induced 9h	4.097
SRR8749029	MeJA induced 9h	1.035
SRR8749030	Uninduced	1.758
SRR8749031	Uninduced	0.659
SRR8749032	Uninduced	0.782

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.305
SRR8400027	Control - Root	26.560