Gene detail

Gene detail information of Glyur000009s00001467

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G03560.1	two-pore channel 1
NR	XP_004487278.1	PREDICTED: two pore calcium channel protein 1-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q94KI8\|TPC1_ARATH	Two pore calcium channel protein 1
trEMBL	tr\|A0A072VBZ7\|A0A072VBZ7_MEDTR	Two pore calcium channel protein, putative {ECO:0000313\|EMBL:KEH39136.1}

Sequence

Transcript Sequence

>Glyur000009s00001467.1
ATGGAGCCTCTGCTGAGAGGCGAAAGCAGTGGCTCGAGGAACCGTTCGCAAGGGATACTACGTCGCACCGACGCTATCTTCTACGGCTCTAACTACCAGAAAGCCGCTGCACTCGCTGAAGATGGTGTTGGTATACCCGAGCAAATTCTTGATTCATCAAGCTTTCAAAGTTATGCAAGATTTTATTTTATGTTCACAAAATGCGATCTCATCTGGACTCTTAGTTATTTTGCTTTGATAGTCCTGAATTTCCTGGAGAAACCTCTATGGTGTGAAAAGAATACCACACATTCGTGCAAAGATAGAGAATATTTCTTTCTGGGACAGTTGCCATATCTAACTGCTGCAGAATGTCTTATTTATGAGGGAATAATTCTTGTTTTGCTAATGGTGCATACTTGCTTTCCATTATCATACGAGGGGTCCCATATATATTGGAAAAGTGCTATTAATCAATTGAAGGCCTTCTGTCTATTAGTTCTTGTTGCTGATATGCTGGTTTATGCTCTGTATATGTCTCCAGTGGCTTTTGATTTTCTACCTTTCAGAATTGCACCTTATATCAGGGTTGTTCTTTTCATTTTGAATATAAGGGAGCTACGAGAAACCGTCATCATCTTGGCTGGAATGCTTGATACATACGTAAATATCTTGGCTTTGGGGCTTTTGTTCCTTGTTTTTGCAAGTTGGGTGGCTTATGTGGTTTTTGAAGATACAATACAAGGGAAAACAGTATTCACTTCCTATGGTACCACATTATATCAGATGTTTCTTTTATTTACCACAGTCAATAGTCCAGATGTTTGGGTTCCTGCATACAAGTCTTCGCGTTGGTATTGCCTATTTTTCATTCTATTTGTGCTGCTGGGAGTCTACTTTGTTACAAACTTGATCCTTGCCGTTGTTTATGAGAGTTTCAAGAGTGAGCTTGTAAAACAAGTTTTTGAGATGGATCGTATGAGAAGAACTATGTTGGAGAAAGCTTTTAATCTCTTAGATACACATAATGTTGGATATCTCAACAAAGATCAATGCATTAGGCTCTTTGAGGAGCTGAACAAATACAGGACTCTGCCAAATATCTCCAGGGAAGAATTTGAGTTGATATTTGATGAGCTGGACGACACTCATGATGTAAAGATCAACAAANATGAATTTGCTGATATTTGCAATGCCATTGCTTTAAAATTCCAGAAGGAGGATGCTCTTTCTTACTTTGAGTATTTAGCATTCTACCATTCACCCACCTCAAAGAGACTGAAAGCCTTTGTAAAGAGCCCCATGTTTGGATACCTAGTGTCCTTTGTACTCATACTGAATCTGGTTGCTGTAATTATCGAGACAACGCTTGACATCCAAAACAATTCTGCTCAAAAGGTGTGGCAAGTGGTTGAGTTCATTTTTGGGTGGATATACGTAATAGAAATGGTTCTGAAGGTTTATTCATTTGGATTTGAGAACTATTGGCGTGATGGTCAGAATCGCTTTGATTTTATTATAACAGTCATAATTGTCATTGGAGAAACTGTAACTTTAGTTTTACCTGATGATGGTCTGCCATTTTTCTCAAATGGGGAATGGATTCGTTACCTTCTTCTTGCAAGACTGTTGAGATTGATAAGGCTCCTTATGCATGTCCAGCGATTCCGAGGCTTTGTGGCAACTTTCTTAACTCTTATACCAAGTTTGATGCCATACCTAGGGATCATATTTTGTACCTTATGTATTTATTGCTCACTTGGTGTACAGATTTTTGGCGGAATAGTTAATGCTGGAAACCCAGAATTGGAAGCAACAGCCCTTGCTGAAAATGACTATTTGCTTTTTAATTTCAATGATTATCCAAATGGAATGGTGACACTTTTCAATTTTCTCGTCGCGGAGATCTGGGAAGAATTGACGGAGGTATATGTGCTGTCACCAATCCTTGTCACTTCCAAAGTCATCTTTTGTTTCATGATAATGTTCCATCTTGTTGTGTCAGGCATAGCACTTAGAGTAAAGCATTTAGTTTTGCTAGGCTGAAATGATTCCATCTTTCCTGTATTTCAGATTGTTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATGGAGCTTGAGTCATCAGAAACTAGTGATGGAAATGACAAGGAAGTTGAAGGAGATAAATATCGAAGGCCGCGATCTGTTGGGATGCACAAAGGAACCACTTTATTCTATAAAGTTTATACAGATCTGTCATGTACTATATCTCTCATGTTGGAATGCTATTTCATAGACTCTGGTACGGAACGAGGAAAAGAAATGTGAAAATCTTCAGTAATTTTCTGGTCAGATCAAACGCGATTTTTCCTTTCTTATTTGTGGAAAAAGCACGTGATCGAATTCGAATGCATTGGTGAGCTTGTGTTGAATGAGAATAAGTGTGTTTGGTTCTGCGGTAGCAAAAATTGATTTTGATTGAATTGATTTTGTAAAATTGATTGTGATTAAAAGTGAGTTGAATGTAACATGATTTATATTTGGATACATTAACAAAAAAGTGATTTTTATCAATTCATGTTTGGATAGTTTTGATCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	494203	516138	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006811 ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005245 voltage-gated calcium channel activity

GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001467.1	PF00520.26	Ion_trans	124	302	1.70E-11
Glyur000009s00001467.1	PF13499.1	EF-hand_7	325	389	1.20E-07
Glyur000009s00001467.1	PF00520.26	Ion_trans	464	660	3.50E-25
Glyur000009s00001467.2	PF00520.26	Ion_trans	124	302	1.90E-11
Glyur000009s00001467.2	PF13499.1	EF-hand_7	325	389	1.30E-07
Glyur000009s00001467.2	PF00520.26	Ion_trans	464	636	1.80E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.175
SRR1783600	control	14.587
SRR1783602	moderate drought stress	23.998
SRR1811619	moderate drought stress	24.691

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.233
DRR006520	Root Summer glycyrrhizin high producing strain	15.602
DRR006521	Root Winter glycyrrhizin high producing strain	40.044
DRR006522	Root Winter glycyrrhizin high producing strain	37.540
DRR006523	Root Summer glycyrrhizin low producing strain	8.267
DRR006524	Root Summer glycyrrhizin low producing strain	7.840
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.686
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.532

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	70.982
SRR2868004	Drought Stress (root)	80.409
SRR2967015	Control (root)	83.730

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.014
SRR9715740	Leaf	18.417
SRR9715741	Leaf	30.154
SRR9715739	Root	4.949
SRR9715742	Root	23.348
SRR9715743	Root	19.739

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.078
SRR8749028	MeJA induced 9h	58.335
SRR8749029	MeJA induced 9h	19.843
SRR8749030	Uninduced	22.748
SRR8749031	Uninduced	14.368
SRR8749032	Uninduced	13.699

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	54.667
SRR8400027	Control - Root	51.216