Gene detail information of Glyur000009s00001450 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28250.1 | 1.00E-102 | expansin B3 |
| NR | XP_007149859.1 | 8.02E-162 | hypothetical protein PHAVU_005G104600g [Phaseolus vulgaris] |
| Swissprot | tr|Q9M0I2|EXPB3_ARATH | 5.00E-130 | Expansin-B3 (Precursor) |
| trEMBL | tr|V7BXR2|V7BXR2_PHAVU | 3.00E-162 | Uncharacterized protein {ECO:0000313|EMBL:ESW21853.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00009 | 405867 | 408448 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000009s00001450.1 | PF03330.13 | DPBB_1 | 77 | 155 | 1.10E-19 |
| Glyur000009s00001450.1 | PF01357.16 | Pollen_allerg_1 | 167 | 247 | 2.70E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.171 |
| SRR1783600 | control | 0.105 |
| SRR1783602 | moderate drought stress | 0.218 |
| SRR1811619 | moderate drought stress | 0.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.927 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.766 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.953 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.838 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.673 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.083 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.744 |
| SRR2868004 | Drought Stress (root) | 14.277 |
| SRR2967015 | Control (root) | 17.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.201 |
| SRR9715740 | Leaf | 0.061 |
| SRR9715741 | Leaf | 0.895 |
| SRR9715739 | Root | 0.071 |
| SRR9715742 | Root | 0.322 |
| SRR9715743 | Root | 0.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.121 |
| SRR8749028 | MeJA induced 9h | 0.324 |
| SRR8749029 | MeJA induced 9h | 0.174 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.756 |
| SRR8400027 | Control - Root | 1.119 |