Gene detail

Gene detail information of Glyur000009s00001449

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20760.1	2.00E-58	Clathrin light chain protein
NR	KHN36628.1	7.11E-164	Clathrin light chain 1 [Glycine soja]
Swissprot	tr\|Q9SKU1\|CLC1_ARATH	6.00E-87	Clathrin light chain 1
trEMBL	tr\|I1M3U1\|I1M3U1_SOYBN	3.00E-164	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G37410.1}

Sequence

Transcript Sequence

>Glyur000009s00001449.1
AAAGTTTTGTATGGGTTAGTACTTGTGGTAATTGATTGGTGAAAGGCGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGCTAGGAAGAGACACACACACACATTGACACATACACATTGTGATCCGAAGCTAAGGGAACGTGAGGTTGAGGGAATGGCGTCGTTCGACTCGTTTGAGGAGCAGCCGCATCAATCGCCGACGAGGGGACCCTTCGACGATGACACCAGCAGCTACAACGGTGACAACATGGGCTACGATCCTCACCACCACTACGATTACGGATCCACATTCCCCCACAACCCCGATGACGATCAACGCCCTGTAGATGATGATCACCTCACCCTCGATGACCATCATCATGCAGATGATCCTAACATCAACATCAACAGCAACAACACGCATCCCCCTGATCCGGTTTACGGCTTCGGGATTTCCAGTACCCCCAACCCTGAGTTCGTCTCCCCCTTCGAACAACCCCCCGCCGGAGATGACGACGGAACCTTCACTTCCGACGGCCCCCTCCTCCCTGACCCCTCCCTCATGCAGGAGGAAGGCTCTGCTAGACGCGAATGGCGACGTAAAAATGCCATTCATCTTGAGGAAAAGGAGAAAAGAGAGAAGGAGATGCGAAACCAGATTATAAAGGAAGCTGAAGACTATAAGCAAGCTTTCTATGAGAAAAGAAAGCTCAATTGTGAGACAAACAAAGAGAACAACAGAGAAAGAGAAAAGATATACTTGGCCAACCAAGAGAAATTTCACAAAGAAGCTGACAAACATTTCTGGAAAGCAATAGCAGAGATCATTCCCCGTGAGGTTCCCAATATCGAGAAGAGGAGAGGGAAGAAAGAAGCTGAGAATAAACCTTCAGTTCATGTTATTCAGGGTCCAAAGCCTGGGAAGCCTACTGATCTCTCTAGAATGCGCCAAATGATCTTTAAGCTTAAACAGAACCCTCCATCTCATATGATGCCTCCCCCACCAAAAGAAGACAAAGATGCAAAAGAAAAGAAAGATGGCAAAGATGGAAAAGACAGCAAAGATGCAAAGGAGGGGAAAAATGACAAGGAAGGGAAAAGCTCAACACCAACTGCAGGTGCTAAAGAGAATAAGCCTGTTTCCCCTGCAAAAGATGCTGCTGCTAATGGTGAACCACAGGATCCTGCCACAGTTGAGGGTGAGCAAGTGGCTAGTTCTGAGCCAGCATCTGCTCAGTGATGAAGACATTTAATATTTTTTTTGTTAGCAATTCTTTTTTATATATATGTATTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	403075	405143	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0016192 vesicle-mediated transport

cellular_component

GO:0030130 clathrin coat of trans-Golgi network vesicle

GO:0030132 clathrin coat of coated pit

molecular_function
GO:0005198 structural molecule activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001449.1	PF01086.12	Clathrin_lg_ch	130	268	7.90E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.546
SRR1783600	control	1.521
SRR1783602	moderate drought stress	1.579
SRR1811619	moderate drought stress	1.542

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.558
DRR006520	Root Summer glycyrrhizin high producing strain	7.605
DRR006521	Root Winter glycyrrhizin high producing strain	0.349
DRR006522	Root Winter glycyrrhizin high producing strain	0.425
DRR006523	Root Summer glycyrrhizin low producing strain	0.518
DRR006524	Root Summer glycyrrhizin low producing strain	0.432
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.673
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.740

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.541
SRR2868004	Drought Stress (root)	0.701
SRR2967015	Control (root)	0.742

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.722
SRR9715740	Leaf	0.073
SRR9715741	Leaf	0.330
SRR9715739	Root	0.019
SRR9715742	Root	0.806
SRR9715743	Root	0.547

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.584
SRR8749028	MeJA induced 9h	0.025
SRR8749029	MeJA induced 9h	0.404
SRR8749030	Uninduced	0.286
SRR8749031	Uninduced	0.173
SRR8749032	Uninduced	0.437

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.157
SRR8400027	Control - Root	2.589