Gene detail

Gene detail information of Glyur000009s00001447

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02340.1	2.00E-56	alpha/beta-Hydrolases superfamily protein
NR	XP_004487293.1	0	PREDICTED: bifunctional epoxide hydrolase 2-like [Cicer arietinum]
COG	YP_003299257.1	1.00E-55	alpha/beta hydrolase fold protein [Thermomonospora curvata DSM 43183]
trEMBL	tr\|I3T7A2\|I3T7A2_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK48394.1}

Sequence

Transcript Sequence

>Glyur000009s00001447.1
TTAGTATCTTGCAACTGCAAAGTAAAATTGTCTCATATCAATAATAGACTCGCAATAGTTTCAACCATATTTCACCAAACAGTATCAAAATATCCAATTTCATTTGTCTCTANCTGCACATGGACACAATGAACCAGATCCCTCATTTGTCCGTTGCCTTCTTTCTTTCTTTCTCTGTTGCCTCATAATAATTACCTCTCACACACACTATATATCTTCCTTTCTGATCAGACACAGATACACACACTGTACCCAAGATGGAGAACATCAAGCACAGTCATGTTGAAGTGAAGGGACTGAAGCTCCATGTAGCTGAGATCGGAACTGGTCAAAAGGCAGTGGTTTTCTTACATGGGTTCCCAGAAATATGGTATACATGGAGGCACCAGATGATTGCTGTGGCTAATGCTGGCTACCGTGCTATTGCCTTCGATTTCAGAGGCTATGGACTTTCTGAGCATCCAGCAGAACCAGAAAAGGCAACTCTAATGGACCTTGTTGATGAAGTCGTGGGTCTTTTAGATTCATTAGGCATCACCAAGGCTTTCCTTGTTGGTAAGGACTTTGGTGCCCTCCCAGCATATCTTGTAGCTGCTGTCCATCCAGAAAAAGTAGCTTCTGTCATAACTTTAGGCATTCCTTTCATGGTTCCGGGTCCTTCTGCTGTTCAGAACCACCTTCTTCCAAAAGGCTTCTACATTACTAGGTGGCAGGAGCCTGGGAGGGCTGAAACAGATTTTGGCCGCTTTGATGTTAAGTCAGTTATAAGGAACATCTACATTCTGTTTTCTAGAAGTGAGGTTCCAGTAGCAGGTGATGATCAAGAAATCATGGACTTGTTTAACCCATCTACTCCCCTCCCACCATGGTTCTCTGAGGAAGACCTGACAACCTATGCATCACTATATGAAAAATCTGGCTTCAGATTTGCATTGCAGGTTCCATACAGGTCTCTCACAGTGGATAGTGGCCTAAGTGATCCTAAAGTCACTGTTCCATCACTGCTGATCATGGGTGAGAAAGACTATTGCTTCAAGTTTCCTGGCATGGAAGACTACATCCGAAGTGGGGCAGTGAAACATTTTGTGCCGGACTTGGAAATCATATATATTCCAGAAGGAAGCCATTTTGTGCATGAACAATACCCAGAGAAGGTGAACCAGCTCATCATTGAATTCTTTGACAAACAAAATATCTGATTNTGTGATTGTCGTACCGGAGGCAAAGACTGTGATGCTCAGTGTTGTATGACAAGTAATAATTCACTTATTATTGTACTGGTGTGTTTTTATCCTATGGTATCTCCTGTTCCAAAAAAAATAGCATTTTGATAGAAATNTCGAGAAGCACTTGGCTAAGAAAGAAAGTTTGTGATTTATTAAGATTAATTAAATTAGTTGGTAATCATCATTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	393994	396623	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001447.1	PF12697.2	Abhydrolase_6	28	302	3.90E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	61.248
SRR1783600	control	61.293
SRR1783602	moderate drought stress	43.167
SRR1811619	moderate drought stress	42.743

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	80.598
DRR006520	Root Summer glycyrrhizin high producing strain	79.616
DRR006521	Root Winter glycyrrhizin high producing strain	36.430
DRR006522	Root Winter glycyrrhizin high producing strain	35.119
DRR006523	Root Summer glycyrrhizin low producing strain	103.537
DRR006524	Root Summer glycyrrhizin low producing strain	103.018
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.348
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.268

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	181.815
SRR2868004	Drought Stress (root)	155.209
SRR2967015	Control (root)	130.853

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.386
SRR9715740	Leaf	21.231
SRR9715741	Leaf	16.678
SRR9715739	Root	22.267
SRR9715742	Root	27.994
SRR9715743	Root	27.336

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.413
SRR8749028	MeJA induced 9h	0.389
SRR8749029	MeJA induced 9h	0.519
SRR8749030	Uninduced	0.371
SRR8749031	Uninduced	0.179
SRR8749032	Uninduced	0.232

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.114
SRR8400027	Control - Root	51.126