Gene detail information of Glyur000009s00001434 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03600.1 | 4.00E-51 | photosystem II family protein |
| NR | KEH39099.1 | 7.39E-89 | photosystem II Pbs27 protein [Medicago truncatula] |
| Swissprot | tr|Q9LR64|PB27A_ARATH | 2.00E-65 | Photosystem II repair protein PSB27-H1, chloroplastic (Precursor) |
| trEMBL | tr|A0A072VAN9|A0A072VAN9_MEDTR | 3.00E-89 | Photosystem II Pbs27 protein {ECO:0000313|EMBL:KEH39099.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00009 | 339505 | 340032 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000009s00001434.1 | PF13326.1 | PSII_Pbs27 | 64 | 171 | 4.50E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.070 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.205 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.156 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.423 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.619 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.209 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.210 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 855.473 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 848.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.603 |
| SRR2868004 | Drought Stress (root) | 6.381 |
| SRR2967015 | Control (root) | 0.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 206.226 |
| SRR9715740 | Leaf | 249.204 |
| SRR9715741 | Leaf | 130.600 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.135 |
| SRR8749028 | MeJA induced 9h | 0.941 |
| SRR8749029 | MeJA induced 9h | 0.228 |
| SRR8749030 | Uninduced | 0.049 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.349 |
| SRR8400027 | Control - Root | 0.324 |